RNA id: XM_021618642.2


Basic Information

Item Value
RNA id XM_021618642.2
length 2461
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110534018
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44765231 ~ 44767832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTGTCTTCTTGCAGGAATTGttcacaacactatgtcaccattgCCAGGCAATGCTTTCAGGGTGAATGGAAGAGCACATGTTGACATCAGTGGCACTACCCAACCCACTACTGGTCCAGGACATCCTGAATCTACAGTTTCCTCTGAAATATTAGCTACCACCACATCCATGGACCTGTCTGTATACACCACTGAAACAGCCTTTACAAAGTCACAACAGGGAGAGTCAAACCCCCCTTCAACAACGTTAGGAGCTCCCTCACCTGGGGATGAAATCATGACGGAAACTTCACATGTCCTGGCAAGCACTTTTACACAAGCACCATCCACAAAAGAACCCCCTGGAAGCACGTCTCAGATCGACCCTGCGACGAAAATGCCCGCACAATTTGAAATAGCAAATGTAAAAACCATAGAAACTACAAACAAATTGGAAGAAACTTCATAtgagacaaaaacaacagagagaACAACCGGGAATGCGTTCAAAACCTCAGCAACAGGCACCTTGAAAACACTGACCACAGTTAATAAAGAAAGAGTAACTGCAACTGCAGAATCATCGGAAAATTCAGAGGTTAAAACACCTGAAATGTCGACAAGTGCATTTGAACCGGTCCGTGTTGACGCTCCTGTGAGATCCTCAACTTCAAAAGACACGATAACTACACCCACAACCTCTTCTTTGATAACAACACCGACAATCAAATCTGCAATCAAATCAGAAATTGCACCAGCATCTGTATATGCTTCAAACTCACCTGTCATGTTAAGAACAACTACATTACAAACCATGGCAACAACTAGGACATTAGGGGGGAATACGTTTGAGCTGTTAGCCACCTCCCCTGGAAAACCATCTGAAAGAACATTAGAGACGTCAACTATAATGCCAATGTCCACAACTGCTTCTTCGGCGCCAGGCAGCGTTTCTGAGACATTGTCTGCAATTACATCACCAAGGACAACTTTTGCCACAGTTGCATTCCTACCTATTGTATCAGTTCCTACACCTGATAGCCCATTGGAAACTAAAGCTACAGCTACGACAGAACGTACAGATGACAGCAATCCTAAAACCACAGCTGCGACTCCGTATGAAACAACTGATACAAACACACCTGAAACATCATCCACAACCCCATCAACTAAACTTAAAACATCATCCACTTATACAACATTCCCATCAACTGCACCGGAGACATCTGTGAAAGTCACTAAAGAACCCTTTACAACAGATGCAACCATGGCCACGAGCTCATCAGAAAAACTGTCAACAGTCTACTTTCAAGCATATCAAACCACAACTACAACTGATACATCAACTATAACTTCTACAACAAGTGACTCTTCAACTATTCCTGTATCTGCAACATTGTTGACAGTTACAGCAGAAAGGATAACTACATTCCCCCCATCAACCGAACCTAAAACAGCATCCACAGCCACATACACAACAATCCCACACACCGAAACTGAAGCATTAACCACAACTACAACATCCATATCAACCCAACCTGAAACATCATCAACAGCCACATACACACCAACCCCATCAACTGAACCCGAAACATCATACACAACTACAACATTCCCATCGACCGAAATGGAATCATCATCCACAACTACATCATCCCTATCAACCGTACCTCAAACATCATCCACAACTGCAACATTCCCATCAATTGAAAAATCATCCATAACTACAACATCCCTATCAACCGAACCAGAAACATCATCCACAACTACAACATTCCCATCAACTGAAACTGAAACATCATCCACAACTACAACATCCATGTCAGCCAAACCTGGAACATCCTCCACAGCCACATACACAACATCCCCATCCACCAAACCTGAAACATCATCCACAACTACAACATTCCCATCAACCGAAACAGAAACATCCTTCAAAACTACAACATTCCCGTCAACTAAAACGGAAACATCCTCCATAGCCAGAAACACATCATCTCCACCAACTGAACCAGAAACCTCATCCACAACTACAACATTCCCATCAACCAAACCAGAAACATCATACACAGCCACATACATTACTGACCCATCAACTGAAACTGAAACATCTTCTACATCCACAACATCCCTATCAACTGAAACTGAAACATCATACATATCCACAACAACCTTATCAACTGAAGCTGATAAATCATCCACAACTACAACATCCATATCAGCCAAACCTGAAACATCATCCACAGCCACATACACAACATCCCCATCAACCAAACCTGAAACATCATCCACAACTACAACATTCCCATCGCCCGAAACTACAACATTCCCATCAACTGAAACTGAAACATCATCCACAACTACAACATACATATCAACCAAACCTGAAACATCATCCACAGCCACATACACAACATCCTCATCAACCGAACCTGAAACATCATCCACAACTACAACATCCATATCAAACAAACCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015006 lncRNA upstream 97509 44667472 ~ 44667722 (+) True G892201
TU1015008 lncRNA upstream 97907 44667110 ~ 44667324 (+) True G892203
TU1015005 lncRNA upstream 98413 44666547 ~ 44666818 (+) True G892200
TU1014997 lncRNA upstream 100608 44664262 ~ 44664623 (+) True G892192
TU1015003 lncRNA upstream 101307 44663696 ~ 44663924 (+) True G892198
TU1015390 lncRNA downstream 290018 45057850 ~ 45166003 (+) False G892532
TU1015365 lncRNA downstream 352854 45120686 ~ 45124746 (+) False LOC110534027
TU1015363 lncRNA downstream 354393 45122225 ~ 45124746 (+) False LOC110534027
TU1015364 lncRNA downstream 354393 45122225 ~ 45124746 (+) False LOC110534027
TU1015366 lncRNA downstream 354393 45122225 ~ 45124746 (+) True LOC110534027
XM_021618635.2 mRNA upstream 142555 44613844 ~ 44622676 (+) True LOC110534014
XM_021618633.2 mRNA upstream 163278 44574931 ~ 44601953 (+) False LOC110534013
XM_021618634.2 mRNA upstream 163278 44574932 ~ 44601953 (+) True LOC110534013
XM_036990406.1 mRNA upstream 191361 44526663 ~ 44573870 (+) False LOC110534011
XM_036990421.1 mRNA downstream 225454 44993286 ~ 45003089 (+) False LOC110534023
XM_036990422.1 mRNA downstream 225475 44993307 ~ 45003084 (+) True LOC110534023
XM_036990423.1 mRNA downstream 272929 45040761 ~ 45123075 (+) False LOC110534027
XM_036990424.1 mRNA downstream 272930 45040762 ~ 45123075 (+) False LOC110534027
XM_036990425.1 mRNA downstream 272930 45040762 ~ 45123075 (+) False LOC110534027
TU1014996 other upstream 105740 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 683821 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 685035 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 824674 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 1021741 43742917 ~ 43743490 (+) True G891856
TU1015341 other downstream 241002 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 786405 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 801620 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 822527 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 854425 45622257 ~ 45643556 (+) False LOC110534042

Expression Profile