RNA id: XM_021618652.2


Basic Information

Item Value
RNA id XM_021618652.2
length 2638
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110534021
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44818510 ~ 44821307 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGCGACGGTGAAACGCCCCTACTCTACCTAGAAGATGGACGTCGAGTCGCTTTAGGCATTGCGACGAGGATCACTATCTTTTATATAACAGTGCAAGTTTACCCCAGACACGCTTTTAATATAACGTTATATTAATAACAAACTTATGTTGCTGAATTTTCCAGAACATTTTTATTCATCACTGTCAGTATATTTTTCTTTCTAGCTAGCATTACGGAGTCAATTGACGTTAGCTTGCCTGCTAacgtagctagccagctaacgttagttaatTTTTTCCGCTTTAACTAACGtcagtgagctagctagctaacttgtcaATAACTAAGTTGACGCATTGTCATCACTATGATCGTAACAGGTAGGTAGCACTGCTTAAGGCTAGCTACTTATCTTTCACGTTAGACTAACTAATAGCTAGTTCAAAGAATTTGCTAGCTACTGAAGTTGCGTTATTCACAGGCGGCGCTAGCTGGTCACCGTAGTAACTACCTAGCTATGGCATCCAGGCGAGGAAATTGTAATAGCGGCGTGGATTCTCCGTTGAGTATCAATAGCACAACCGGTGGTCCTAATCGTAAACAAAGTATAATCAACAccccaaacagatctgggactactCCTTGTTATGATCGTAAAGTAGGGAAGGCTGAGTATGGGCACCAAGCATGCCAGGGCAACATGACTGTATCCTCACTGAAGACACGTCTAGCCCCGACCATTCAAACCACGTTAACCGCTGCTGTAGATACCCTCTTGGGCGAGGTAGTACTTGTACTCAACGAGACCCAACAAGAGCTGGTTAACAAGGAGCAGGAGAACGAAAGACTCAAAGTGGAATTGAGGACGTTACAGGAATGCCTTAGCAGCGCCCAAAAGTTAATCGACCAGTTGCAAATTCCTTTCCCCGGTGCACAGACCATGGGTCAATCGGTTTTTGCCCCGTCTCTCACATCTATTGGCTCTATGACCACAGCTATGGACAGGGACCGCCAGAGCAATCGTAATGTGAACGGTGCGGACGGCCGGTGTGTTTCCGGGGTCGACCTAGAGATGGGTGGCTCTCTCAGTGAGTCTCTGCATGGTTATAACTCCAGGGATGACTATAAAATGTGTCAGCTCTCAATCCAATCAGATGGCTCTGTGACCAACCATTCTATGGACTCCTATGCTGCCAACACACCTAACATCTGCTCTGACCCCAGCCGGCCAGATGAGAGGCGGCAGCAGCAGGGGACCCAAGCAGTAGGACCAAGGTTTGAGATCAAAGAAGAGCAAGGGCCTGGTCCAAGTTCAGGTCCAGGGCAGACCTGCAGTAGAGGGGCAGGGCTGAGGAGTGCCGggggtgctggtggtggtggtggtggtggtgagcagACTGCCCCGAATGTGGATGATCTGGGATACATCCATGTGGTGGAGCAAGAGGGGTCATCACGCTCCAGCAGCTACTCTCTCCGCCAACCAAAACCCATGCGGCCACCTGCTGCTACCTTTGGTCCGGCTCAGGGGGGACAGGCAGGACAGAAAGTGGAGTTGAGGTCCCCTGGAGCAGTAGGAAGTGACAGCATGTCCCCAGGTAGGGCAGGAGGGGCAGCAGGACCATCCACCTCTCCaggagacccagatgcagatcgCCCCCACCATTGTCTGGAGTGTGGGAAGACCTTCCGCCTCATCTCCAGCCTGAAGAAGCACATCCGCatccacacgggagagaagccctACCCATGTGGGGTGTGTGGCCGACGCTTCCGGGAGTCGGGGGCCCTGAAAACCCACCTTCGCATTCACACCGGCGAGAAGCCCTACTCCTGCTCTGATTGCCCTAAAATCTTCCGCCACCTAGACGGCCTGCGCAAGCACCAGCGCACCCACACTGGTGACAAGCCCTACGTGTGTGCCATCTGTGGCAAGCGTCTGAGCCGACTGCAGCACCTGAAGCACCACCAGCGCATCCACACCGGAGAGAAACCCTGCAGCTGCCCCTTCTGCAACCGCACCTTCAAGGAGCCTGCGGCGCTGCGCAAGCATGTCCGCACTCATCGTGAGGAGTCTGGCAACATGGAGGCAGGCGTGGGAGACGACCCGGACCCAGAAGCCCTGGACAACATCAACAGCCTCCACCCTGCTGCCCCCTCCCCTCAGATGAGGTTTGATGAGTGGGGAGCTGAAGGGGATGATGTGGACTGTGTGTAGGATGGGCTCATCCTTCTGTCTACTGCCTACAGCATTAGAACGCGACCTTGAAAGAGTCTTCCTATTCCATTACTGTACTGTGTGAGAAAGCCTCCGTTCCTTTCCTGAGAAACAGGCTATCTACATCCTTAGTGTTGTCCAGTGACCAGGGTAGCCTATTGTTTTCAGAGACACTTCATTTGCCTGTCTGACCCTCTGCCACATCTATCATTTAGTGCTTTATAATCTTAGAAATGTGAAAGTATTTTATACAATATGAAATGTACCTATGTATCATGTCCCCCTTTCTCTCGTTGCTAATTACCTTCCTATACAACTCCCAACAACCTACCTAAACTGTGTTTGAATACTCATACTAAACATACTATTTGTGACATAAATTGAGTATGTATTATGCTTATTGTTATAGGTATGGATATAATTAAATGCCTAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016447 lncRNA downstream 101956 44716298 ~ 44716554 (-) True G893497
TU1016281 lncRNA downstream 160708 44655547 ~ 44657802 (-) True LOC110534017
TU1016426 lncRNA downstream 163476 44654813 ~ 44655034 (-) True G893477
TU1016285 lncRNA downstream 179384 44637774 ~ 44639126 (-) True G893357
TU1016283 lncRNA downstream 194706 44621421 ~ 44623804 (-) True G893356
TU1016460 lncRNA upstream 132873 44954180 ~ 44959512 (-) True G893508
TU1016766 lncRNA upstream 371822 45193129 ~ 45280890 (-) True G893782
TU1016817 lncRNA upstream 440836 45262143 ~ 45263484 (-) True G893822
TU1016765 lncRNA upstream 453167 45274474 ~ 45278522 (-) True G893781
TU1016833 lncRNA upstream 466845 45288152 ~ 45288513 (-) True G893834
XM_021618645.2 mRNA downstream 5602 44775368 ~ 44812908 (-) False LOC110534019
XM_021618647.2 mRNA downstream 5602 44775368 ~ 44812908 (-) False LOC110534019
XM_021618650.2 mRNA downstream 5602 44775368 ~ 44812908 (-) True LOC110534019
XM_021618644.2 mRNA downstream 5603 44775368 ~ 44812907 (-) False LOC110534019
XM_021618643.2 mRNA downstream 5609 44775368 ~ 44812901 (-) False LOC110534019
XR_005053676.1 mRNA upstream 19405 44840712 ~ 44843123 (-) True LOC118936697
XM_021618653.2 mRNA upstream 24270 44845577 ~ 44851400 (-) True LOC110534022
XM_036990417.1 mRNA upstream 57300 44878607 ~ 44931844 (-) False LOC110533119
XM_036990420.1 mRNA upstream 57300 44878607 ~ 44978196 (-) False LOC110533119
XM_036990418.1 mRNA upstream 57875 44879182 ~ 44978256 (-) False LOC110533119
TU1016497 other downstream 49438 44768450 ~ 44769072 (-) True G893541
TU1016171 other downstream 509577 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 609246 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 1107541 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 1134590 43683574 ~ 43683920 (-) True LOC110533962
TU1016641 other upstream 190022 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 926008 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 926008 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 1095972 45917279 ~ 45918339 (-) True G894917
TU1019905 other upstream 2409497 47230804 ~ 47233046 (-) True LOC110534118

Expression Profile