RNA id: XM_036990417.1


Basic Information

Item Value
RNA id XM_036990417.1
length 2543
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC110533119
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44878607 ~ 44978256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCGTTGAAATGGAAAAGCGGTTCTCCTGTCAGCTGGAAATTCCCAGTGCCAGTTCTTAAGACATCCAGGTCCTCGCCGCTCTCTCCTGCCTACATATCCCTCGTGGAGGACGACGACCCTCACATGAAAGTGTCGCAGGGGTGTGGTGACATGGGCATCTCTGCCCACCTACAGGCTTCAAAAACCGGAAACACTCGCTTCTTTACGAGCAACACGCACAGCTCAGTGGTCCTTCAGggATTTGACCAGCTGAGGCTAGAGGGATTACTGTGTGATGTCACGCTGGTGGCGGGGGACGGAGACGAAGCCTTCCCAGTGCATCGAGCCATGATGGCCTCCTCCAGCGACTACTTCAAAGCCATGTTCACAGGTGGAATGAAGGAACAGGATTTAATGTGCATCAAACTTCATGGTGTCAACCGTATAGGCCTGAAGAAGATCATAGACTTCATCTACACGGCCAAGCTGTCTCTCAACATGGAGAACCTGCAGGACACACTGGAGGCAGCCAGCTTCCTCCAGATCCTACCTGTGCTCGACTTCTGCAAGGTCTTTCTCATATCTGGGGTGTCCTTGGATAACTGTGTGGAGGTGGGGCGCATCGCTAACGCATACAACCTCACGGAGGTAGACAAATACGTCAACAACTTCATCCTCAAGAACTTCCCCTCGCTGCTGGGTACGGGGGACTTTGTCAAGCTGCCCTTTGAGCGGCTGGCCTTCGTTCTGTCCAGTAACAGTCTGAAGCACTGCAGCGAGCTGGACCTGTTCAAGGCTGCATGCCGCTGGCTCCGCTATGAGGACGGACGCATGGACCACGCCCCCAAGCTCATGAAGAACATCCGCTTCCCCCTCATGAACCCCCAGGAGCTCATCAACCACGTGCAAACGGTGGACTTTATGCGCACCGACAACACCTGCGTCAACCTCCTCTTGGAGGCCAGTAACTACCAGATGATGCCCTACATGCAGCCAGTCATGCAGTCAGAGAGAACGGCCATCCGCTCAGACAGCGGCCACCTGGTCACCCTGGGCGGCGTCCTGCGCCAGCAGCTGGTGGTCAGTAAGGAGCTGCGCCTGTTTGACGAGAAGGCCCACGAGTGGAAGGCGCTGGCGCCAATGGATGCACCGCGCTACCAGCACGGCATCGCCGTCATCGGAAACTTCCTCTACGTGGTGGGGGGCCAGAGCAACTACGACACCAAAGGCAAGACGGCGGTGGACACGGTGTTCCGGTACGATCCGCGCTACAATAAGTGGATGCAGGTAGCGTGTCTTAACGAGAAACGTACCTTCTTCCACCTCAGCGCTCTCAAAGGACACCTCTACGCCGTGGGCGGCCGCAACGCTGCGGGGGAGCTGGCCACGGTGGAGTGCTACAACCCGAGGACAAACGAGTGGACGTACGTCGCCAAAATGAACGAGCCACACTACGGCCACGCAGGGACGGTGTACGGCGGTTACATGTATATTTCGGGGGGAATCACTCACGACACGTTTCAAAAAGAGCTGATGTGCTTTGACCCGGATGCAGACAAATGGACTCAGAAAGCGCCCATGACCACGGTGCGTGGCCTGCACTGTATGTGCACGGTGGGCGACCGCCTCTACGTCATCGGGGGGAATCACTTCCGGGGCACCAGCGACTACGACGATGTGCTCAGCTGTGAATACTACTCCCCGGCCCTGGACCTGTGGACGCCCATCGCCGCCATGCTGCGGGGCCAGAGCGACGTGGGCGTGGCCGTGTTCGAGAACAAGATCTACGTGGTGGGTGGCTACTCATGGAACAACCGCTGCATGGTGGAGATAGTGCAGAAGTACGACCCGGAGAAGGACGAGTGGCACAAAGTGTTTGACCTGCCTGAGTCGCTGGGCGGGATCCGAGCCTGCACACTGACCGTGTTTCCCCCAGAGGACATGATGGGCTCCCCCTCCAGAGAGTCACCCCTCTCAGCACCTTGAagaatgggggtgggggggagtccaCCCCGCTCCGCTCACACCCCCACAACCCCCCACACTCCATAGACATTGTTTGCACTTTTGGACTACATCTGTACTGCATCCCGATACACCCCTTCCTCCCCCAAAGCTGTGCAGAACCCCCCTCCCTAGTGATGAAATCCACATACCGATATGGTTTGGCAACCTAATTAAATGTTAATGTTGCATATTCGGTATATTTTGGCAGGAAATACCTTGACTTGAAGAGTGACTGAAGAGTGCAATTCAACTTTTCTACCTGATGTCTTTGGAGTTTTACTATGTCCTGTTTCTTTAGATGTGTTCCCGGGTAAAAACCATGCTGTTGATGACCATACTGACGCTCTTAGTCTGTGCCAGGTTAGGGGCAGGTGACCCCCCAGAGGGACAAAATATTGGCAGCTGAGCTCCACACAGATATGGTTTTAAACTCAGGGGTCGGCCCTTCACCCCCTCTCTTCTTTCAGTTTCAGTTCTTTCCTGCTATTGCTATGAAACCGTTAACAAAATTGTGTTTTCTAAATTTAATAAACAAGATTTTGGAAAAAATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016447 lncRNA downstream 162053 44716298 ~ 44716554 (-) True G893497
TU1016281 lncRNA downstream 220805 44655547 ~ 44657802 (-) True LOC110534017
TU1016426 lncRNA downstream 223573 44654813 ~ 44655034 (-) True G893477
TU1016285 lncRNA downstream 239481 44637774 ~ 44639126 (-) True G893357
TU1016283 lncRNA downstream 254803 44621421 ~ 44623804 (-) True G893356
TU1016460 lncRNA upstream 22336 44954180 ~ 44959512 (-) True G893508
TU1016766 lncRNA upstream 261285 45193129 ~ 45280890 (-) True G893782
TU1016817 lncRNA upstream 330299 45262143 ~ 45263484 (-) True G893822
TU1016765 lncRNA upstream 342630 45274474 ~ 45278522 (-) True G893781
TU1016833 lncRNA upstream 356308 45288152 ~ 45288513 (-) True G893834
XM_021618653.2 mRNA downstream 27207 44845577 ~ 44851400 (-) True LOC110534022
XR_005053676.1 mRNA downstream 35484 44840712 ~ 44843123 (-) True LOC118936697
XM_021618652.2 mRNA downstream 57300 44818510 ~ 44821307 (-) True LOC110534021
XM_021618645.2 mRNA downstream 65699 44775368 ~ 44812908 (-) False LOC110534019
XM_036990415.1 mRNA upstream 22580 44954424 ~ 44958833 (-) False LOC118966783
XM_036990416.1 mRNA upstream 22580 44954424 ~ 44958833 (-) True LOC118966783
XM_021618657.2 mRNA upstream 71397 45003241 ~ 45010614 (-) False LOC110534024
XM_021618658.2 mRNA upstream 71397 45003241 ~ 45010947 (-) True LOC110534024
XM_021618659.2 mRNA upstream 81369 45013213 ~ 45017446 (-) False LOC110534025
TU1016497 other downstream 109535 44768450 ~ 44769072 (-) True G893541
TU1016171 other downstream 569674 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 669343 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 1167638 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 1194687 43683574 ~ 43683920 (-) True LOC110533962
TU1016641 other upstream 79485 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 815471 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 815471 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 985435 45917279 ~ 45918339 (-) True G894917
TU1019905 other upstream 2298960 47230804 ~ 47233046 (-) True LOC110534118

Expression Profile