RNA id: XM_036990421.1


Basic Information

Item Value
RNA id XM_036990421.1
length 3844
RNA type mRNA
GC content 0.51
exon number 20
gene id LOC110534023
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44993286 ~ 45003089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTCCATCTTTGCTTTATGTTTTCAGATCAGCGTATATGAAAGAGACGACCGGGGGTTTGAAGCTGTCAAATAAGTTCGCGCGAGATTTCCGAATGTGTGTTTTTAATCTTTTGGGGGTGTTCTTCTTCCTCCTTGTTTGTGAAGCTGCCCTAAATTTGTTGCGGCTGCAGTCGTATTTCTAGAAAGACCGCGGTAATAGGTAGCCGTTTTAGCGGTGACCTTTAATTCAAAGTATTTATTTATGAATTGATTCAAGAAACTTGGTAGCTAGCTAAAGACTAGGGCCACCTTCTtcgttagctagctacgttagcaATAGCGGCCAGTACCGGCAGTAGCTAGTACACACAGGTGAGTGGCCTCTCCCAGGCattagctagtagctagctagcaacatctGGGTGTATCCTACAGAAAGAAGTCCGTTTTCAGTGGAGTAACCTTTTTATTTCCTGTACGAATTGTATGTATTCATAATAAACCGACCACATCTAAATATTGCAGCGATTTCCCTTATCTGATTGTATCCATCTAAACTAGCTAGGTACGTTAGCAAGCTAACTAAATGGCGTCAGATAGTGACACAGAGGAATTCTACGATGCTGCTGAAGACGTCAATTTTACTCCATCTCCTAAAGTGACACCTGCAAAGTTTGTCCTTCCCACACCTCAGGGGGTGGTAGAGAGCCCACCAGAGGACGTGGCTGTTGGGCTGGCCGCACCTGAGGCACGCCAAGATGACTCCATTCAGATCATCGACAGCATCATTGAGGAGAGCCAGAAGGGAAGTTCAGTGGAGGAGGCTcagctgaaggaggagaggaatgttGATACAAGGGCAGAGTCAGAGGGGAAGGACGAAAATGTGGCCCCTGTAGAACGAGAGCATCCTGCTATTGAAACTCAGCCTGTGGTTGAGAGATCAGAGCAGCCACAGGAACAGCAGGAAGCGTGTTCCATGGCTCTCCCAGACATCCCCAGCCTGTTGTCAGGGTCACAGGAGCACGTCCAGCCCCCAGACATCACCAGCACCCTGGGGCAACTAGACCTCCAGCCGGACCTCCCTGACCTACCCCGGGTGTCTGCAGAGGACAGGGATAGGGAGCAGAGACCAGCAGACATCCTAGACCAGGATCCCCTCACAGACAAGCCGGCTGGCTCCTCTGACCCGGGGCCTACAAAACCCCCACGGCAGTTCACTGTAGAGCCTGACATTGTGGCCAGCACCAAGAAACCTCCACCTTCACGCCCACCCCCTCCCAGCGGAGCTGCTCCTCCACGGCCACCACCCCCATCCCGGCCTGCTTTACCCCTCAGCAAGAAGTCCCAGGAGTGTATAAGGCCAGCAGGACTGGAAGGGGAGCTGGAGGAGCCGTGTGGCCTGGTGTCTCCCAGCAGCACAGTGAGGAGCATCACCAAGGATCTGCAGCACTCTTTGGACCTGGCTAGCGCCACCAGTGGGGACAAGGTTGTCACAGCACAGGAGAATGAGGATGAGCAGGCATCCAGTCCCATTGGCGACCCTCTAGGTCCTCAGCGTCCACGATCCAACTCTGGCAGAGAGCTGACTGATGAGGAGATCCTGGCGAGTGTGATGATCAAGAATCTGGACACAGGTGAGGAGATCCCTCTCATCCAGGCGGAGGAGAAGCTTCCCACAGGGATCAACCCACTCACATTACACATCATGAGGAGGACTAAGGAGTACATCACGAATGACGCAGCACAGTCAGATGATGATGACAAGGCCCAGGCTCCATTGACCGACTCTGACGGAGGGAAGCTGAAACAGAAAACCACTCAACTGAAGAAGTTCCTGGGCAAGTCTGTGAAGAGGGCCAAGCATCTGGCTGAAGAGTATGGTGAGAAGGCCGTCAACAAGGTGAAGAGTGTCCGTGATGAAGTGTTTCACAATGACCAGGATGACCCGTCTTCCAGTGATGATGAGGGGATGCCCTACACCCGGCCTGTCAAGTTCAAGGCAGCCCACAGCTTCAAGGGCCCCTTTGACTTTGATCAGGTCAAGGTGGTCCAGGACCTGAGTGGAGAGCACATGGGTGCAGTGTGGACCATGAAGTTCTCACACTGTGGGAGGTTGTTGGCAACAGCAGGCCAGGACAACGTGGTGCGAATCTGGGTTCTGAAAAATGCCTTTGACTACTTCAACAACATGAGGATAAAGTACAACACTGAAGGCCGTGTGtcgccctctccctctcaggAAAGCCTGTGTTCCTCCAAATCAGACACGGACGGTGGGGTGAGTAAGATGAGCAGTGTTCCTGAAGACCCCGATTCAGAGGACAAGAATCTCCCCTTCCGCCAAGTCCCCTTTTGCAAGTACAAGGGTCATACGGCTGACCTGCTGGACTTGTCCTGGTCAAAGAACTACTTCTTACTTTCCTCGTCAATGGATAAGACGGTCCGACTGTGGCACATATCCAGGAGAGAGTGTCTATGCTGCTTTCAGCATATTGACTTTGTCACAGCCATCGCTTTCCATCCCAGAGATGACAGGTACTTCCTGAGTGGCTCTCTGGATGGGAAGCTGCGTCTGTGGAACATCCCAGACAAGAAGGTGGCTCTGTGGAACGAGGTGGACGGACAAACACGCCTCATCACTGCTGCCAACTTCTGCCAGAATGGGAAGTACGCCGTCATCGGCACCTACGATGGCCGCTGCATCTTCTACGACACTGAGCGCCTTAAGTACCACACCCAGATCCACGTACGGTCGACCAGAGGCAGGAATCGAGTAGGACGGAAAATCACAGGCATCGAGCCTCTGCCTGGAGAGAACAAGATTCTAGTGACCTCCAATGACTCCAGGATCCGCCTGTATGACCTGCGGGACCTGTCTTTGTCCATGAAGTACAAGGGTTACGTCAACAGCAGTAGTCAGATCAAAGCCAGCTTCAGCCATGATTACTCATTCATTGTGAGTGGCTCAGAGGATAAGTACGTGTACATCTGGAGCACCTACCATGACCTGAGCAAGTTCACCTCAGTACGACGAGACCGCAATGACTTCTGGGAGGGAATTAAAGCCCACAATGCAGTAGTGACATCAGCTATTTTTGCGCCCCATCCTAACCTGATTGTCCCCCAGGAGGCGGGGGCAGAGAAAGCGGGGGCTGGGGCAGATGCAGAGTGTAAGAGCTTGGACTCTACTGACTCTGAGACCATTCCCTCAGGGGCTCTGAAGACTGATCATACAGAGGTTCTGCTCTCTGCTGACTTCACTGGTGCCATTAAGGTTTTCATCAATGTAAAAAAGTACTGAGCACTTCACCCTGAACCCTTCCTGATCTAGCCGTCAGTGTACAGTCCTTCAATGGAGGCAGAGCAACCTGCTGCCCTGCCAACGCTTCTAAAACCGGCCAATTGCCTACGGGTGAGTTCTCCTCCGGAGAACAGGGACCCTGCAGTAgaggatgaggtggaggaagTGAACTGTAAATGGAGGAAGCAGCTCACGGATGTCCtgtcacattttttttgtttaacaCAAAGAACAAGTGTGCACGGTTTGAGACGGTCAGACTGTAAAGCAGGACCGGTAACTGAGGGATGGATGATTAAAATACACTCTGACAAATAGCTTACATTAGTGTAAGGGGTACGCTGTCTTACTCTTAACTTTACTGCGTTTCTAGTACCCCGGTGCTCCTCCTTGCCAGGAATGACGGTCTTAAATTTGTTAACTAAGCACTAACTCCAATCATTACGGTTGCAAATCTTCGTCTGTCAGTGTGTAATGAATAATAAAATGgaaccacttttttttttttttacattgtttatgATTCACTTAATAAAGTAAACGGTATTCTTGTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015006 lncRNA upstream 325564 44667472 ~ 44667722 (+) True G892201
TU1015008 lncRNA upstream 325962 44667110 ~ 44667324 (+) True G892203
TU1015005 lncRNA upstream 326468 44666547 ~ 44666818 (+) True G892200
TU1014997 lncRNA upstream 328663 44664262 ~ 44664623 (+) True G892192
TU1015003 lncRNA upstream 329362 44663696 ~ 44663924 (+) True G892198
TU1015390 lncRNA downstream 54761 45057850 ~ 45166003 (+) False G892532
TU1015365 lncRNA downstream 117597 45120686 ~ 45124746 (+) False LOC110534027
TU1015363 lncRNA downstream 119136 45122225 ~ 45124746 (+) False LOC110534027
TU1015364 lncRNA downstream 119136 45122225 ~ 45124746 (+) False LOC110534027
TU1015366 lncRNA downstream 119136 45122225 ~ 45124746 (+) True LOC110534027
XM_021618642.2 mRNA upstream 225454 44765231 ~ 44767832 (+) True LOC110534018
XM_021618635.2 mRNA upstream 370610 44613844 ~ 44622676 (+) True LOC110534014
XM_021618633.2 mRNA upstream 391333 44574931 ~ 44601953 (+) False LOC110534013
XM_021618634.2 mRNA upstream 391333 44574932 ~ 44601953 (+) True LOC110534013
XM_036990403.1 mRNA upstream 419416 44527437 ~ 44573870 (+) False LOC110534011
XM_036990423.1 mRNA downstream 37672 45040761 ~ 45123075 (+) False LOC110534027
XM_036990424.1 mRNA downstream 37673 45040762 ~ 45123075 (+) False LOC110534027
XM_036990425.1 mRNA downstream 37673 45040762 ~ 45123075 (+) False LOC110534027
XM_036990426.1 mRNA downstream 37673 45040762 ~ 45123075 (+) False LOC110534027
NM_001124308.1 mRNA downstream 122463 45125552 ~ 45149685 (+) False LOC100135968
TU1014996 other upstream 333795 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 911876 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 913090 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 1052729 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 1249796 43742917 ~ 43743490 (+) True G891856
TU1015341 other downstream 5745 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 551148 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 566363 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 587270 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 619168 45622257 ~ 45643556 (+) False LOC110534042

Expression Profile