RNA id: XM_021618658.2


Basic Information

Item Value
RNA id XM_021618658.2
length 3155
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC110534024
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45003241 ~ 45010947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAAATGGGCGgagtttatgactttgtggctgtgttaattAATGACGACCGTTTTATTGGTCAGAGCGAGAAGTGACATCGCTTTTCCGCTATGTCCATTTTTGTCTATTCAAAATGGTGGAGCAATAACAAACGCATTGTACATTTCTACGTATCAGCATGGCAGACAAAAATGGCAAGAAAGGGAAACCTGTAGGTGTTAAGAGAACATTGACCAAGAGAGAACAAGAAGATCTGAAGAAAAAGGAACAAGAAAAAGCAGCTGACGTTTTTGAAGAGTTTTTAGCATCTTTTGACAGTAACGACAAAAGTGGGGTGAAAACGTTTGTTCGTGGGGGGATCGTGAATGCAACTAAAGAAGAGGAAGCAGCAGAGGTCAAAAAGAGCAAGCTTTACCGACCGAACACGAAGTTTACTTCAGTGTCCCAGAATGTCTCACCAGCACACTCTTCGGAAGTCAGAAGGCCGATTGTTAAAAAGAAgacagaagagaagaagaagagcaaCCTTGAACTTTTCAAAGAGGAGCTAAAGCAAATACAGGAGGAACGTGAAGAAAGGCACAAAAAAAAGAAGAATGAGCCTGGAGGAGGGTATGGAGAATTGGACATACCACTAACACGACGATCAATATTTGATGATGACCCAGCAACACCGAACACAACGAACCTGTACATTGGCTGCATTAACCCAAAGATGAATGAAGAAATGCTTTGCAAAGAGTTTGGCAAGTATGGTCCCCTGGCAAGCGTGAAGATCATGTGGCCCCGTAGTGACGAGGAACGTACCAGGGTCACAAACAGAGGCTTCGTGGCCTTTATGACCAGGAAAGATGCAGAGAGGGCCTTGGCTGCTCTAGACGGTAAAACAGTTTTGGGTTTTGAAATGAAGCTGGGATGGGGGAAAGCTGTTCGCATCCCTCCCCAGCCTCTCTATACACCCATAGGGGTACTGAAAATCTCcactcccccacccccctctggCCTGCCCTTCAATGCTCAGCCCCGAGACCGCTTCCGTAATGACTTTACCAAGCCATGGGGCAGGTCTAAGGAGGAGTTTGACAAGACTCTGTCCGAAGCCGTAGTCAAAGTGGTTATCCCAACAGAAAGGAATCTGTTGGGCCTCATCCACAGGATGATAGAGTTTGTGGTGCGTGAGGGACCCATGTTTGAAGCCATCATTATGAGCAAAGAGAAGAACAACCCTGACTTCAGGTTCCTGTTTGACAACAAAAGCCAGGAGCAGGTGTACTACCGCTGGAAACTCTACTCCATTCTCCAGGGCGAGCCCCCCAGTGAGTGGAGGACGGCAGACTTCCGGATGTTCCGTGGGGGCTCCATCTGGAGGCCGCCCCTCCTGAACCCCTACCTCCATGGAGACGAGGAggcgggagaggaggaacagTCTCCCTCTCAGGAGGAGGAGCTGAAAAAGGGCCAGCTGAAGACAGAgcacagagagagactggagacacTGCTGAGAGGGCTCACCCCTCGTAGGGAGGATGTTGGTGATGCCATGCTGTTCTGTCTGGAGAGAGCCGAGGCAGCGGAGGAGGTGGTGGGGTGCATCGCGGagtccctgtctctccttcagaCACCACTGCAGAAAAAGATTGCCAGACTGTACCTGGTATCCGACATCTTGTACAACTCCTGTGCCAAAGTTGCCAATGCATCTTATTATCGCAAGTATTTTGAAGCAAAATTGCCCCAGATATTTGGTGACATTAGTGATGCATATCGAAACATACAAGCAAGACTACAAGCGGAACAATTCAAGCAAAAGATAATGGGCTGTTTCAGGGTCTGGGAAGACTGGGCCGTCTACCCAGAGCCCTACCTGATCCAGCTGCAGAATATCTTTCTGGGTCTTGTCAAGGCAGGAGATGAAGTGATCGAGAGGGTAGAGGTGGCGTCTCCAGACCTGGATGGAGCCCCATTGGACGGGGCACCGTTAGATGGAGCTCCGCTGGACGACCTTGACGGCTCGCCCCTGGCCTGGGACCCTGCCTCCCTGGATGGGGTGCCTGTTGACGACATCGACGGAGTTCCCCTGGGCGCTCCCATGGATGACATCGACGGAATGCCTTTGGATGATCTGGCCCACTCCAAAGTGGCTCTGTCTAAATGGGAGAGGGTGGACGATGCTGAAGCTCTCCCACAAGCTAACACTGAATCCAAATGGGACAGTGTGGGAGAGCGATattctggggacaacatgaatgTAAGTACTAACACTAAGGAAGGAGATGGCGAATCAGAGGGTGACAGCAGCGATGATGACAGCCCATCTAAGTACGACAGTGCTGACTTCAAGAGCTCCCTCAGTAGTTTTGAGATGTCTGAGAGCAAGAGGAGCCGGCTGAGAGAGCTGGAGGTGAAGGTGATGCAGTTCCAGGATGAGCTGGAGACTGGGAAGAGGCCCAGGAAGTCCGGAATGAACATGCAGAAACAGGTGGAGCACTACAGGAACAAGCTGCTACAGAAGGAGTTTGATAAGGATGACCAGGAGAAGAAAGAGCGATCCACGCCGAAGTCAAAAGACAGAtcaaagaaagaggagaggagagacaagacaGAGGAGAGCAGTAAAGGACGGGAGAAGGAAAAGAGCAAAAGGAGTCAAGACCGGGATAGGAGCAGGGACAGGGGACGTAGTAGAGACACAGAGGAACGGACACAGAAATACAGAGGACATTCTCCCTCAAAAACAAAGTCAAAGTCTCCCAAGAAGTCCAAGCGGTCCCGGTCGCCCTCGCCAGCCAGGAAGACGTGGAGAAGGTCTAGCTCCCGGTCACCACACCGCTCCCACAAAAAGACAAAGAAGAGCAAACACTGATCCAGAGGCCTGGACTCCATGCCTCTCCCCTTGACACAGCAAGGCGACTCCCATGGACTGTCCTGGTCTGCCAGTGATTACCATGACACGGCCCCACCACGCTCGTTTCCTCACAATGCCTCTGAACTGTCAGCTGTTTGTTTCCCTCTGTACCGATATCCTGATTGCTGCAGTCAAGATTTGGCAAATTTTTTGTAAGATGACGTTTGAACATTATTTGTACAGTTGTTGTGCCGTTTGTTTTTAAACCCCATTCAGATTATTGCGACTAGTCCCTGAGATGTCACAATAAATCACTATTGGCATTGTG

Function

GO: NA

KEGG:

id description
K12842 SR140; U2-associated protein SR140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016460 lncRNA downstream 43729 44954180 ~ 44959512 (-) True G893508
TU1016447 lncRNA downstream 286687 44716298 ~ 44716554 (-) True G893497
TU1016281 lncRNA downstream 345439 44655547 ~ 44657802 (-) True LOC110534017
TU1016426 lncRNA downstream 348207 44654813 ~ 44655034 (-) True G893477
TU1016285 lncRNA downstream 364115 44637774 ~ 44639126 (-) True G893357
TU1016766 lncRNA upstream 182182 45193129 ~ 45280890 (-) True G893782
TU1016817 lncRNA upstream 251196 45262143 ~ 45263484 (-) True G893822
TU1016765 lncRNA upstream 263527 45274474 ~ 45278522 (-) True G893781
TU1016833 lncRNA upstream 277205 45288152 ~ 45288513 (-) True G893834
TU1016794 lncRNA upstream 313019 45323966 ~ 45326807 (-) False G893809
XM_036990418.1 mRNA downstream 24985 44879182 ~ 44978256 (-) False LOC110533119
XM_036990419.1 mRNA downstream 24985 44879182 ~ 44978256 (-) True LOC110533119
XM_036990420.1 mRNA downstream 25045 44878607 ~ 44978196 (-) False LOC110533119
XM_036990415.1 mRNA downstream 44408 44954424 ~ 44958833 (-) False LOC118966783
XM_036990416.1 mRNA downstream 44408 44954424 ~ 44958833 (-) True LOC118966783
XM_021618659.2 mRNA upstream 2266 45013213 ~ 45017446 (-) False LOC110534025
XM_021618661.2 mRNA upstream 154671 45165618 ~ 45181157 (-) False LOC110534028
XM_036990427.1 mRNA upstream 154671 45165618 ~ 45181163 (-) True LOC110534028
XM_036990430.1 mRNA upstream 316364 45327311 ~ 45350171 (-) False LOC110534031
XM_021618666.2 mRNA upstream 316364 45327311 ~ 45381903 (-) True LOC110534031
TU1016497 other downstream 234169 44768450 ~ 44769072 (-) True G893541
TU1016171 other downstream 694308 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 793977 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 1292272 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 1319321 43683574 ~ 43683920 (-) True LOC110533962
TU1016641 other upstream 382 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 736368 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 736368 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 906332 45917279 ~ 45918339 (-) True G894917
TU1019905 other upstream 2219857 47230804 ~ 47233046 (-) True LOC110534118

Expression Profile