RNA id: XM_036990423.1


Basic Information

Item Value
RNA id XM_036990423.1
length 4933
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC110534027
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45040761 ~ 45124746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTCTACTTTGTGCGCATGGGCAGAGAAACTACCGCTTGTTATTATTGTAAGAATAATTCCTCTTATGAAAATGGCGTCGAGTCAGGGAGGTGTGGGAGCTGTAACTGCTCTTCCAAACCATCACTTATCCAACGGACCTCACTGGAACCCGGGGATCAACCAGCATCAGCTCCACACGGCCCGGAGTTTAGACCGCGCTCTGGAGGATGCTGTGTGCTCAGGGACGTTGAATCTTAGCGGGAGGAAGCTGAGAGACTACCCTGGACTGTGCTATGATCTTACTGATACAACGCAGGCAGATCTGTCGAAGAACAGGCTCACAGAAATTCCCCCAGAGGTGTGTCTGTTCGCCCCACTCGAGTCCCTCAACCTATACCACAACTGCATCAAATGCATCCCAGAAACCATCATCAACTTGCAGATGCTGACCTATCTCAACATCAGCCGGAACCTTCTCTCAACATTGCCAAAATACCTGTTTAGCCTCCCCCTCAAAGTGCTGGTGGTGAGCAACAACAAGCTAGTGTCCATCCCAGAGGAAATTGGGAAGGCCAAAGAGCTGATGGAGTTGGACATCAGCTGTAATGAGATCCAGGTGCTGCCCCCTCAGGTGGGGAGGCTCCAGGCCTTACGGGAACTCAACATCAGGAGGAACTGTCTTCACATGCTGCCTGAGGagttGGCGGACCTGCCACTCACCAGACTAGACTTCTCCTGCAATAAGATCACAGAGATCCCTCCTGTCTACAGGAGACTCAGGCAGCTGCAGCACATCATCCTCGACAACAACCCTATGCAGTCCCCACctgcacagATCTGCCTGAAGGGCAAGGTGCACATCTTTAAGTACCTGAACATCCAAACATGTAGGTTGAATAAGAAGCCTGACTCTCTGGACCTCCCCTCCCTGGGCAAACGCTGCCTTCCCCAGCCTCTGACCGACAGCATGGAGGATTTTTACCCCAGTAAGAACCACGGTCCTGACTCTGGTATCGGCAGTGACAACGGGGATAAAAGACTGTCTACGACGGAGcCTTCTGACGATGACACCATCAGCCTGCACTCTCAGGTCTCAGAGACGGCCCGCGCCGacgcgctctctctcctctccaagatGGACTCAGGCAAAGATCAGGAACCCTATGACTTCATCGAGCCCAACCCAGAGGAGGATGCTGCCCTGTCAGAGGGGGACGGGCAGCAGAGTGGTGGACCCTACATCTCCTGTATAAAGGAATTGGAGAAGGTTCTTAACAAGTCACACCAAAGCAAAGATAAGGAAAGCTGGAAAGAGGAGTCTGGCTCTGATAAAGATCAGCTagctgaggaggaggaagaggaggaggaggaggaagagctgAAGGAGGTGCTGGACCTGAGGAAGATTGCCGTCCAGCTCCTACAGCAGGAGCAACAGAACAGACGACGATCCTTAATTTGTAGAGCAGAGAGTCTAATTCATCGAAGGAGGGTTGCCGGCCGTGCACACAGGTTCCTCAGTCACTCTGGCAGCTCCGGCAGCAAACAAAGGTTCCCCTCTCAGGCTATCCGCAGtGCCTCTCTGGATGAAGCGAGCAGTGGCACGTCAGTGCTGAGTGGGCAGGACCCTGACTTCACAGACGACGACGACGCTTTCTCTGAGccCTCCTCTTCATGCTCCTACGATGGCAGCCTGAAATCCGAGTCAGACACGGACCCAAAGTGGCCAGAGGTTCCACCTGTACTCAACCAGAACGAGGAGCGCAGGAGGAACAAGTATCTGAGGAAAGATTATCTGAAGAACAAGTGCCAGAGTGCCCGACGAAACTCCAGTGGGAACGACGAGTGTGAGGAGGTATTGCGGAATGCTGAGTTCAGCACCACCCTCACAGTCTTTGGCCTTAAACCAAGATCAGCTTTTTGCCGAAGCAGCCGCCAGGAGCCGTCTGACCCCAGTTTCACcatgaggaggaagatggagcACCTGCGGGAGGAGATGGAGCAGGTTGGCCTCCTACGGCAGAACCTGGAGTCCAGACTGAAGGTCTTGCTGCCggacgatgtgggagctgctctGATGGATGGCGTTGTCTTGTGCCATCTGGCCAATCACATTCGTCCTCGGTCGGTGGCCAGCATCCATGTACCCTCGCCCGCAGTGCCAAAGCTTAGCATGGCCAAGTGCCGCAGGAATGTGGAAAACTTCCTGGATGCCTGTAAGAAGCTGGGTGTGCCACAGGACAAGCTGTGTTTGCCCCACCACATCCTAGAGGAGCGTGGGCTGGTGAAGGTGGGCATGACCGTCCAGGCTCTACTGGATCTGCCAGCCTCCAAGCCCACCCAGCTGTCTGCTGTCTAACAGCAGCCTGGACACTGCCTCCACCCTCCCTGTCCAGTCCAGTCAAgccattaacccccccccccccccccccagccctacACCCCACAGAGGAGGGGGCTTCCAGCCCGCTTCGCTCATCACCAGAGAACCCTTAGGGGCGAGGGCCCGGGGGGTTGCAGGGAGTCCATTGTCAGCTGATTGAGCCAGGAGAAGGAGGGGTTCATTCAGATCCTCCCACCCTTCCTATATGATGTCAGCTTGGCCCCGCCTCCCATCCATCAGATTGTTAGCTTCTGTCATGTCCTACCCTCAGGGGaccctactgtactgtgtgtgtagagTACCAGTGTGACTGTCTGTGTGACCTGCGCAGTGTGGACTTTATGAGTGCTGGTGAACATAAAGCCAGGTCAGACTAAGGAGGGAATCGCAGTGAAGATGAAGACCTGTCTGTCACCATGGTGATATTGACTGGCCCATGGTCAGACACCATTGAACCTAGTGGTGCCAACACTGAAGTCACTGGGTTTTCAATTCTCGGTATTAAAATACATTGGTAGTGAAGTGATAGCTGTTTTAAAGGCATGTACTCACTCTTTCACTCAGAGAACTTAACTGCATGCTGGCCCACCAGCCATACCACATAACTCAAGTGGTCCTTAACCTCTTTTAATTTTCTTTTGTAGAACAAATTAGCATTCAAATTGGATTTTGAGTCATATTTGTACAAGAGCGTTGTGTTCTGTCACAGCATACCTCTGTTTGATATCACAGAGGTAAAGCTTGGGATGTCCTTAACAGTGCTTTACCTCAGAGGAGCCACCAGTAGCTTAACCCCAGTACACACACTTCTTACAGTCTGCATTTGACTAGAATTATTGTACTGTCAATAACAGTGCTATTTGGGGGACGAATGCTAAGTTTACTTTTAAAAGCATGGTGTCCATGATTCAGATGGATGTTAAAACTGCCGCACATTCGGATAGAGACTTTCTCACCTGCACAAGGTTGCCGATGGTGTTGGTCTCATGTCCAGTGACCCATCTGTCTACTGCTCTGCTGTGGTGAAGGGAGGATGCTCTGAGGTACTGCAGGTGGTTTTGATAGCTCACCACACTGTACAGTATACGAGAGAGCCATCCCACTGTCACGGGACCTTCTGTCAAATGCAGACCTAAAGACATAAGACTACTGTGACTGCATGTAGCTTTGATTCGAACCACATGTTCGTTTTGAATAGGACTAGTTGAAAGCACAGGGGTATGTAGTTGGGATATTGTACCATATACACTTACAATCCTGAGATTGTATCTTTTGGTCATTTGATGCaatgaaacattttatttttttatgttgaaATATTTCATCTTTACGTTTACAACTTGCTCCTCTGGTTGGATTCACATCTGCAAAATGTAAAATAAGGAAAACAAAATAAGCAATTAGGTGATCCCATAGATTAATCTTGCCATTTGAAATATTTTATCAGGGAAactatttatctatttattttttctatttatgtgctttgtttgtttgtgtttcaccCCTGATGACCCCCTTAAGTTATTTGACAGGAGTTTTCAGCTCCAAACTTATGATATTGTCCTGCTTTAATGCTGCatttgtaaaaatacaaatagtgGGAAGTGGTAATTTACCAccatagagttagatagaggacTCTAGATTGATTAAAAACCTGTTCTGGcgttgccattgagggcttcacAATTTTTAAAggagtcaactgggtgggacttccttgTGGGTGAAGGAAGGATCACATCATTCCATCCGGGtaatcaggagggatcagccaataaaTTATACTcatgagcaaacattccataactctaggtggcagtaaatcgccatccttggctttatacctgttcaagcAACACACTCTAGATGGCAGTAttcaccctttcagtttgtttaccaactcacAGAAGTAGTAGATTAAGAAAATTGACAACGCCCTCTATGGCGCTGCCCGTGCGATCACAGAGGCCATAATGGAACATGTACAAAGATCTCTACGTTTACCACATACGACTAggaaaaatacatttgaacagccctccaactggtaattactagtggaaAACTTGTCTCATCCTTGAGTGGGAGGTAGGAATTTACCAGTTGTGAAAtcgtaaataccagttggatgccTTGGTAGTCTGCCTTGATCTGGTTGAGAAACCCCCGATTTGCTAATAGACAAAAAGCTGTCTCAAACATTAACTAAAAGTATAGCTATCAGgtttgtaaacaaattatagtgTTTAAAAACCATATTAATATATTAGCATTTGGGTACGGTTTGTTCTTAGGTGTCTCAAAGTCCGATTCAATTAACCTCAAATTGCAGGAAATCTAAACCATTGTTCCTGCTGCGAATAGTTTCACTTAAAAGGAGTTTCATTTGGTTTCCATTTAGTAATGATGGTCCTATTATTGCAAATATCCATTCTTAACTTCAAATTTGCTTTTGTGTGGGATGCAGGAACAATGGTatttcaaataacattttattagtcacatgcaccgaatacaacaggtgtagacctacagtgaaatgcttacttacgagcccctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015006 lncRNA upstream 373039 44667472 ~ 44667722 (+) True G892201
TU1015008 lncRNA upstream 373437 44667110 ~ 44667324 (+) True G892203
TU1015005 lncRNA upstream 373943 44666547 ~ 44666818 (+) True G892200
TU1014997 lncRNA upstream 376138 44664262 ~ 44664623 (+) True G892192
TU1015003 lncRNA upstream 376837 44663696 ~ 44663924 (+) True G892198
TU1015444 lncRNA downstream 31385 45154460 ~ 45155522 (+) True LOC110534924
TU1015389 lncRNA downstream 41495 45164570 ~ 45166003 (+) False G892532
TU1015391 lncRNA downstream 41495 45164570 ~ 45166003 (+) True G892532
TU1015467 lncRNA downstream 70922 45193997 ~ 45280893 (+) True G892607
TU1015494 lncRNA downstream 200894 45323969 ~ 45326891 (+) False LOC110534030
XM_036990421.1 mRNA upstream 37672 44993286 ~ 45003089 (+) False LOC110534023
XM_036990422.1 mRNA upstream 37677 44993307 ~ 45003084 (+) True LOC110534023
XM_021618642.2 mRNA upstream 272929 44765231 ~ 44767832 (+) True LOC110534018
XM_021618635.2 mRNA upstream 418085 44613844 ~ 44622676 (+) True LOC110534014
XM_021618633.2 mRNA upstream 438808 44574931 ~ 44601953 (+) False LOC110534013
NM_001124308.1 mRNA downstream 2477 45125552 ~ 45149685 (+) False LOC100135968
XM_036989317.1 mRNA downstream 14310 45137385 ~ 45149685 (+) True LOC100135968
XR_002475185.2 mRNA downstream 31337 45154412 ~ 45155664 (+) False LOC110534924
XM_036990428.1 mRNA downstream 77609 45200684 ~ 45276970 (+) False LOC110534029
XM_036990429.1 mRNA downstream 77609 45200684 ~ 45276970 (+) True LOC110534029
TU1015341 other upstream 29912 45008834 ~ 45010849 (+) True G892499
TU1014996 other upstream 381270 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 959351 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 960565 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 1100204 43938412 ~ 43940557 (+) True G891951
TU1016991 other downstream 431162 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 446377 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 467284 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 499182 45622257 ~ 45643556 (+) False LOC110534042
TU1017187 other downstream 777970 45901045 ~ 45901811 (+) True LOC110534056

Expression Profile