RNA id: TU1015363


Basic Information

Item Value
RNA id TU1015363
length 2488
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110534027
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45040761 ~ 45124746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acttccttgTGGGTGAAGGAAGGATCACATCATTCCATCCGGGtaatcaggagggatcagccaataaaTTATACTcatgagcaaacattccataactctaggtggcagtaaatcgccatccttggctttatacctgttcaagcAACACACTCTAGATGGCAGTAttcaccctttcagtttgtttaccaactcacAGAAGTAGTAGATTAAGAAAATTGACAACGCCCTCTATGGCGCTGCCCGTGCGATCACAGAGGCCATAATGGAACATGTACAAAGATCTCTACGTTTACCACATACGACTAggaaaaatacatttgaacagccctccaactggtaattactagtggaaAACTTGTCTCATCCTTGAGTGGGAGGTAGGAATTTACCAGTTGTGAAAtcgtaaataccagttggatgccTTGGTAGTCTGCCTTGATCTGGTTGAGAAACCCCCGATTTGCTAATAGACAAAAAGCTGTCTCAAACATTAACTAAAAGTATAGCTATCAGgtttgtaaacaaattatagtgTTTAAAAACCATATTAATATATTAGCATTTGGGTACGGTTTGTTCTTAGGTGTCTCAAAGTCCGATTCAATTAACCTCAAATTGCAGGAAATCTAAACCATTGTTCCTGCTGCGAATAGTTTCACTTAAAAGGAGTTTCATTTGGTTTCCATTTAGTAATGATGGTCCTATTATTGCAAATATCCATTCTTAACTTCAAATTTGCTTTTGTGTGGGATGCAGGAACAATGGTatttcaaataacattttattagtcacatgcaccgaatacaacaggtgtagacctacagtgaaatgcttacttacgagcccctaaccaacaatgcagtttaaaaaaaaaatgcggatgggaataagaaataaaagtagcaagtaattaaatggcagcagtaaaataacaatagcgagactatatacaggggggtaccggtacagagactatatacaggggggggggggggggggataggttttgtcgtgccctcttcatgactgtcttggaatgcttggaccatgttagtttgttggtgttgtggacaccgaggaacttgaagctctcaacctgctccactacagccccgtcgatgagaatgggggtgtgctcggtcctctgtttcctgtagtccacaatcatctccttttgtcttgatcacgttgagggagaggttgttgtcctggcacggCCAGGTCTCTGCAATGTCCGTTTTGATTTAATCAGTGTTACTCACTGATAAATATTTAACTCCTTACTCATACTACTGTTTGTTGCCAACAACACTGTTGTTCCCACTCCGATGTCTATCTGTTTTTTTACTGTCACTCGCTCATcgcttattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtggagctCATGTATGGTATCACAGTTTTTTAATATGCCAAGCATTTTATTATTGACATGATGGTCGAACTACTGTAAATACATTACCTGTACAAGTGAGAACATTCCATTATTTTAGTTGgctttgtgtctgtgtttatctGTTAATTGGAACGTGCTGTGCTTGTACACACTGAAATCCGAGCTGGCCATGGAAGCCTGCTTTGACGGACGTTTTTGGGAATGTATCTCTGATGCAGTTCAATTTTCGTGTATAGATAATTTTATTATGTTCTAATTGATGATTGGTGGTTTCAGTATGTATTCCGTTTGGCTGCCTCCCCTGTTCAGAATGCCTTGCACATATTTTACCTGCCAGtgaccaccccaccccacccactgCATCGCAATTGCCAGAACAAGAGCTGTTGATGTCTCTGACTCATAGTTACTGTGTTCCCATTTGTTTATCTCTATACTCATCCCAGAAACATGCAACATAGCCCATCTCCTCCTCTAATTAAAAGTGCCAAGGCCCTCAAAAGCAACACTTCAACAAGGCTTAGTTGTAATTATAGTCATCAAGTAGCCTACCAATGTGACAAGACTCTTCAACTGGTGTTTGAGTTGGACACCGAGATCATTCCTTAAGATTCTCTTGACACAAGACATAAAAATGTACAATTGTTTGTTGACAGAACATAATTACCAGCTATCGTTCCTTATTCTTTATATCAAACAACTTTCATACAAGCCTTATACTTCGGTAATCCTAATACCAAATGAATTGTTCATCCCTAATTGGTTGCCATGTCTGAGCATTAGTAAGCTTTGTGTCGTGGTATAATGTATATGTTATAAACCTGCCCCATTTTCCTCCAGACCCATCCACATTAGCCTAGTCTGCTTTCCCACTTGTCCCTCACGTCTACGTCACTCATGCTGTTTTGAGCTTTCAATTCTTTGATTAAAAGAGCTGGAAGAATCATCTACACATTATACTGCCGAGAAGCATTCTGATGTATTCTGTACATACAGGTTTTGTATTTAAAAGAAACAATGCATGCAAGGATCCTGGATGACCGagccccatgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015006 lncRNA upstream 454503 44667472 ~ 44667722 (+) True G892201
TU1015008 lncRNA upstream 454901 44667110 ~ 44667324 (+) True G892203
TU1015005 lncRNA upstream 455407 44666547 ~ 44666818 (+) True G892200
TU1014997 lncRNA upstream 457602 44664262 ~ 44664623 (+) True G892192
TU1015003 lncRNA upstream 458301 44663696 ~ 44663924 (+) True G892198
TU1015444 lncRNA downstream 29714 45154460 ~ 45155522 (+) True LOC110534924
TU1015389 lncRNA downstream 39824 45164570 ~ 45166003 (+) False G892532
TU1015391 lncRNA downstream 39824 45164570 ~ 45166003 (+) True G892532
TU1015467 lncRNA downstream 69251 45193997 ~ 45280893 (+) True G892607
TU1015494 lncRNA downstream 199223 45323969 ~ 45326891 (+) False LOC110534030
XM_036990421.1 mRNA upstream 119136 44993286 ~ 45003089 (+) False LOC110534023
XM_036990422.1 mRNA upstream 119141 44993307 ~ 45003084 (+) True LOC110534023
XM_021618642.2 mRNA upstream 354393 44765231 ~ 44767832 (+) True LOC110534018
XM_021618635.2 mRNA upstream 499549 44613844 ~ 44622676 (+) True LOC110534014
XM_021618633.2 mRNA upstream 520272 44574931 ~ 44601953 (+) False LOC110534013
NM_001124308.1 mRNA downstream 806 45125552 ~ 45149685 (+) False LOC100135968
XM_036989317.1 mRNA downstream 12639 45137385 ~ 45149685 (+) True LOC100135968
XR_002475185.2 mRNA downstream 29666 45154412 ~ 45155664 (+) False LOC110534924
XM_036990428.1 mRNA downstream 75938 45200684 ~ 45276970 (+) False LOC110534029
XM_036990429.1 mRNA downstream 75938 45200684 ~ 45276970 (+) True LOC110534029
TU1015341 other upstream 111376 45008834 ~ 45010849 (+) True G892499
TU1014996 other upstream 462734 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 1040815 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 1042029 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 1181668 43938412 ~ 43940557 (+) True G891951
TU1016991 other downstream 429491 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 444706 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 465613 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 497511 45622257 ~ 45643556 (+) False LOC110534042
TU1017187 other downstream 776299 45901045 ~ 45901811 (+) True LOC110534056

Expression Profile