RNA id: NM_001124308.1


Basic Information

Item Value
RNA id NM_001124308.1
length 1733
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC100135968
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45125552 ~ 45149685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAGTACAGGCAGCGTACAGTACATGACCCCCGCTGAGACCTTGACTCGATTCACAGGGCCAGAAGAATGTTGAAGAGTAAAACGTGGCAGTTGACAGCCATATTAATGCTTATATCTGATTGGAGTCAGTGCATCAAGTCACAAGAATGTACAGTGGATCCTCCTGAGAACATTGGGATTGATGACCCTGGCCACCTCGGGCCGCTCTATATCCACTGGACGGCTCCAGCCAGCCTGACCAACTTGACTGCCTGCTCCATGAGATACCATCTGGAGTACTTCAACACATATCAGAGCAGATGGACTGTGATCAGGACTGTACGGACATGGTACCGTGCTCAGTTTGACCTGGAGAAGGAGGTCAGGGTGCGGATCTCCACCTTACTGAAGGGAGCCTGCACCAACGGCACTGAGCTCAAGAGCCCCTTCACAGAGATGGTTCTGCCACCCAATAACACAGGCCCAGTTGGCTCCAGGGTCCAGGGGTTTGGTTGCGTGTTTTATCAGAAGGAGTTCATGGAGTGCACCTGGGAGACGGGCTTGGAGGAGCCAACCCAATCCCAGTACAGCCTGTACTTTTGGCATCGGGAGATGGAGCAAGCGGAAGAGTGTCCTCAGTACATCCACTCCAATGGGGTCAGGACTGGCTGCAAATTCACAGAGGAATCTCTCTCAGAATTCAGTGATTTCAACATATGCATAAACAGCTCCTCTCCCGAGGTGGTCTTGAGGTCGGCGTTCTTCTCCCTGCAAATTCAGAATTATGTGAAACCTGCAGCCATTGAGACAGTGCATCTGGAAGCTAGTCCAGACAGGAGGCTCCAGGTGCAGTGGGACTTGCCCAACGAGAGGATTCCCAGGCACTGCCTTGAGTATGAAGTGGAAGCCAGAGAGGAGGGCGTAGGCGGGCAGCCATTGTTGCAGAGGAACGTAACAAATGAGATGACGCTGACTTCCCTCTCAATGGATGGTGCCCGGAGGAAGTGCTTCCGGGTCAGGTCTAGGATGCACCACTACTGTGCTGACAGAGGCTTCTGGAGTGACTGGAGCCATTGGTCCTGTCACTCAGATACAGAGTCAGATGCTGTGGTGGGCTGTGCCGTGGTCATCGGGATCATCGTCTCTATGTTGATCCTGTCTCTGTTTGGGTGGGCACTATGGAGAAAGTGGAAAGCCAGAGAGGGGGAAATGATGCCTTTCAGTCCCCTGCACAAACTGATGGAATATTCCAAAGGACTCTCTGCTCGCAGTCATTTCAATAAAACAAGAGAGAACCAGTAGTATAGCCTTTGCAAGCATTACCTTTGGGCAGACAAATGATAAAGAGATCAGAGTTAGACTGGTGTTCACACTTATTTGAAGCACCCATGCAAACATGCTCAAACACACCCATGCGCACACCCATGCACAGAAGAATAGGAAGTGTTCTTACCGAACCATTTACGTAATGTAAAACTCCCGGTTTTACGTTACACAGTATAGACTTAAGAAATGCCATAGCTCTTTCCGGTTTGTTTACTTTCCACATGTCTTTCATTTATATCACAAATTATACTTACTGGAGTCGGTTTTTGTAGTTTTAGTTTGATGCCATTGCATTCAGTCGAATGTATCTTTTAAGTGCTTTGCATAGAATTCCCTGGCCTGTTAAAATTGGATGGTGTTGAACTaatgttatgtttaatacaattTTTTGCTGCTCTATAGCTATAAAGATGCGTTGTTTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015365 lncRNA upstream 806 45120686 ~ 45124746 (+) False LOC110534027
TU1015363 lncRNA upstream 806 45122225 ~ 45124746 (+) False LOC110534027
TU1015364 lncRNA upstream 806 45122225 ~ 45124746 (+) False LOC110534027
TU1015366 lncRNA upstream 806 45122225 ~ 45124746 (+) True LOC110534027
TU1015006 lncRNA upstream 457830 44667472 ~ 44667722 (+) True G892201
TU1015444 lncRNA downstream 4775 45154460 ~ 45155522 (+) True LOC110534924
TU1015389 lncRNA downstream 14885 45164570 ~ 45166003 (+) False G892532
TU1015391 lncRNA downstream 14885 45164570 ~ 45166003 (+) True G892532
TU1015467 lncRNA downstream 44312 45193997 ~ 45280893 (+) True G892607
TU1015494 lncRNA downstream 174284 45323969 ~ 45326891 (+) False LOC110534030
XM_036990423.1 mRNA upstream 2477 45040761 ~ 45123075 (+) False LOC110534027
XM_036990424.1 mRNA upstream 2477 45040762 ~ 45123075 (+) False LOC110534027
XM_036990425.1 mRNA upstream 2477 45040762 ~ 45123075 (+) False LOC110534027
XM_036990426.1 mRNA upstream 2477 45040762 ~ 45123075 (+) False LOC110534027
XM_036990421.1 mRNA upstream 122463 44993286 ~ 45003089 (+) False LOC110534023
XR_002475185.2 mRNA downstream 4727 45154412 ~ 45155664 (+) False LOC110534924
XM_036990428.1 mRNA downstream 50999 45200684 ~ 45276970 (+) False LOC110534029
XM_036990429.1 mRNA downstream 50999 45200684 ~ 45276970 (+) True LOC110534029
XM_021618664.2 mRNA downstream 140872 45290557 ~ 45325874 (+) False LOC110534030
XM_021618665.2 mRNA downstream 153370 45303055 ~ 45325874 (+) False LOC110534030
TU1015341 other upstream 114703 45008834 ~ 45010849 (+) True G892499
TU1014996 other upstream 466061 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 1044142 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 1045356 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 1184995 43938412 ~ 43940557 (+) True G891951
TU1016991 other downstream 404552 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 419767 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 440674 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 472572 45622257 ~ 45643556 (+) False LOC110534042
TU1017187 other downstream 751360 45901045 ~ 45901811 (+) True LOC110534056

Expression Profile