RNA id: XM_021618661.2


Basic Information

Item Value
RNA id XM_021618661.2
length 882
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110534028
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45165618 ~ 45181163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggaggagagaggacttcAATCAGGGTTTTCATCCCAACTCGCTACAGTCGATTCTGAACTTTCGGATTGAGGGTGCTGGAGGACGCTGTCACAGCTTTTCTCCTCTGCTCTATTTCAACACGCGTGGATCGAAGTAAACTTAATATGAAAACATGTCTGTAAATGAAGTGTACGTTTTCAGACCATTCAAGTTGATTGCTTTACTTTGTGTCTTTCTGGCATTGTGTCTGGACATTGTAGCGTTATTGAGTCCCGCCTGGGTAACCGCAGAGCGGTTTTCTTTGTCGCTATGGGAATCATGCACCGAAAAAGATTCTGGCTGGAGATGCCTTTCCACCCTCAAATCTGACTGGCAGATAGCCACCCTTGTGTTGCTGCTGGCTGGTGCTGCGGTGACTCTGGTGGCCTTCCTGGTGGCCCTCGTCTCCCTGTGCCGGGGGACACACAGACAGCACTACCGCACAGTAGCCGTGTTCATGTTCGCTGCAGTGGTCCTTCAGGCCTGTGCACTGGTCCTCTACCCAATCAAGTTCATTGATGGGACCGTCCTGCAGACCTACCATGAGTTCAACTGGGGCTACGGACTGGGCTGGGGAGCTACCATCTTCATGCTAGGGGGAGGCATCCTCTTCTGCCTCCGGACGGACATGTATGAGGATGCTATGTACTGagccctcatctctctccttctcctactctctctatctctctcttgctctttctgtcacacacgcacacacacacacacacgcacgcacgcacgcacgcacgcacaaataAATATTCACACCCATACTctggtacaacacacacacacacacacacacacacacacacacacacacacacacacaaataaatattCACACCCATACTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016460 lncRNA downstream 206106 44954180 ~ 44959512 (-) True G893508
TU1016447 lncRNA downstream 449064 44716298 ~ 44716554 (-) True G893497
TU1016281 lncRNA downstream 507816 44655547 ~ 44657802 (-) True LOC110534017
TU1016426 lncRNA downstream 510584 44654813 ~ 44655034 (-) True G893477
TU1016285 lncRNA downstream 526492 44637774 ~ 44639126 (-) True G893357
TU1016766 lncRNA upstream 11972 45193129 ~ 45280890 (-) True G893782
TU1016817 lncRNA upstream 80986 45262143 ~ 45263484 (-) True G893822
TU1016765 lncRNA upstream 93317 45274474 ~ 45278522 (-) True G893781
TU1016833 lncRNA upstream 106995 45288152 ~ 45288513 (-) True G893834
TU1016794 lncRNA upstream 142809 45323966 ~ 45326807 (-) False G893809
XM_021618659.2 mRNA downstream 148172 45013213 ~ 45017446 (-) False LOC110534025
XM_021618658.2 mRNA downstream 154671 45003241 ~ 45010947 (-) True LOC110534024
XM_021618657.2 mRNA downstream 155004 45003241 ~ 45010614 (-) False LOC110534024
XM_036990419.1 mRNA downstream 187362 44879182 ~ 44978256 (-) True LOC110533119
XM_036990430.1 mRNA upstream 146154 45327311 ~ 45350171 (-) False LOC110534031
XM_021618666.2 mRNA upstream 146154 45327311 ~ 45381903 (-) True LOC110534031
XM_036990443.1 mRNA upstream 434717 45615874 ~ 45618337 (-) False LOC110534045
XM_036990441.1 mRNA upstream 434717 45615874 ~ 45618420 (-) False LOC110534045
XM_036990442.1 mRNA upstream 434717 45615874 ~ 45629020 (-) True LOC110534045
TU1016641 other downstream 149571 45011329 ~ 45016047 (-) True LOC110534025
TU1016497 other downstream 396546 44768450 ~ 44769072 (-) True G893541
TU1016171 other downstream 856685 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 956354 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 1454649 43710485 ~ 43710969 (-) True G892965
TU1018024 other upstream 566158 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 566158 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 736122 45917279 ~ 45918339 (-) True G894917
TU1019905 other upstream 2049647 47230804 ~ 47233046 (-) True LOC110534118
TU1020355 other upstream 2806604 47987761 ~ 47989076 (-) True G896841

Expression Profile