RNA id: XM_036990428.1


Basic Information

Item Value
RNA id XM_036990428.1
length 3725
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110534029
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45200684 ~ 45276970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACCCAGCAGTGCAGCCGGTCAGGTATGCACAGCTCATGGACTAGAGCGAGGCAGACAAAGGCAAAAAGAGCTCGTGCCGCTTTCCTGCAGCATCCACACCCACCCACTTCGCTCCATACACTCCAGCGCGGACTCCCCAGAGCTCTCCACCTTCAGCACCCGTCTACCACGGACCCTCCCGGACCTCTGTTGCCATGGAGCTGGACTTTGGCCATTTCGACGAGCGAGACAAGCCCCGTAACCCGCGGGGCGGGCGCATGAACGGGCTGCCCAGCCCCACCCACAGCGCCCACTGCAGCTTCTACCGCACGCGCACCCTGCAGGCTCTCACCAACGAGAAGAAGGCCAAGAAGGTGCGGTTCTACCGCAACGGAGACCGCTACTTCAAGGGCATTGTGTACGCCGTGGCCGTGGAACGCTTCCGCACCTTCGACGCCCTCTTGGCCGACCTGACGCGCTCCCTCTCCGATCACATCAACCTTCCCCAGGGGGTCCGCTTCATCTTCTCCATCGACGGAACGCGCAAGATCACCACCATGGACGAGCTGGAGGAAGgAGAGAGCTACGTCTGTGCGTCCGAGAACATCTACAAGAAGGTCGACTACACGAAGAACGTCAACCCCAACTGGTCTGTGAACGTGAAGGCCTCGGCCAGCCAGAAGAACCTGCAGAGCCTAGCCAGTAAGCAGGCCGGCGAAGCCCGGGAGGGCAAGGAGTTTGTTCGGCCCAAGCTGGTGACGGTGATGCGGAGTGGCGTGAAGCCGAGGAAGGCCGTCCGCGTGCTGCTCAACAAGAAGACCGCGCACTCCTTCGAACAGGTGCTCACCGACATCACAGAGGCCATCAAGCTGGAGAGCGGCGTGGTCAAGAGGATCTACACACTGGACGGAAAGCAGGTCACCTGTCTTCAGGATTTCTTTGGTGATGATGATGTCTTCATTGCCTGTGGCCCAGAGAAGTTCCGCTACGCCCAGGATGACTTCTCCCTGGATGAGAATGCACACTACCCCTCTGGAACCAAACCCAAATCAGCCCAGGGGGCCTTTAATAACCAAGAAGGTTGCAGGATGATGAAGAAGAAAAGTCCAGGTCAGATCCGGCGCAGCAAGTCTCCTGCTGAATCGACCAATGGGACGGCCTCCAGCAGCCAGCTCTCCACCCCAATTTCCAAGCAGtcccccacctccacccccaacagcccaggCATCCACCGCAAGCAGAAGGATCTCTACCTGCCCCTATCTCTGGATGATGATGATTCTCTTGGGGAATCCATGTAGAGCCTCCTGTCTGTCAGCTGCTGCCTGCCTACCCGTCTCCCACTGGCCTGCCACTCGGAGGTATCTCTGGTGCTCTCCACCTTCACTGACGGCCAGCGTCCTCTAGTGTACTATCCGGGAGGACTTCTCCATTTGATCTCTCCCTGGTGCCACGTGCTATGTCTACCTGGCCTTGGCCACCACGGCTGTTCCACCTTTTGCTGCTTGAGAATTCACCACTAGATCTTGTTTTTTATATCCTATGTTGTTAAGAATGTATATGCTGGGCGTATACGACAATGATGTACGAATTACTGCATCTTAACAAATTCGCCAAATCCTtctattgtgtgaaagtccagggTTTACTCTTATGCTCTCAGAAGGGGCACATCATTTACTAACAAGCAATTTCAAAGATGCAGTTCCCACAATGTAACTACAAAAGTGTCTTTTTTTCCCAGTTGAAAACCATGCATTCTGATATAGGGCAAATCACACATTTCTACGATTTTCCCAATTCAAGTGCACAATTCCAAGCAGCAAATGGACTATTTCTCTGGGGTGTAGTAGTCAGTAGTCACGTTTTGCTCATAATGtccctctttgtcctctctctttctgtgctaTGGTTCAAGCTGTTAAAAGTAATGAGAACATTTTTAGGGGAAGGCGCTTTAGCCGTGAGAGGTGAATGTCCTCCTTTTCATCTACTGTAAATACTGTGTATAGCCATTGCAACATCCCAGCTAATGCCTAACATTCATAACTATGCTTTCACAAAACGTCAATACATCGCCTGCCAAACGTTGAGTCAACATAACATGTTTTCTGTGCATCGTCTATCTATGAGGTCTTCAAAAACTGCAAGGCACAGTGGAGCCAAGCGGCTTTGAAACCGTGGGCATGTAGAGTAGGGTTACTGGGGTAAGTTATACTAGTGTGTACAAACCAACCAAAGCCAGAAAAAAAAAATTGCccttttaaaaaacaaacaagcacgtccatttttttaaattaaataacgGTTTAGGATTCTTAAATGTATTTTGGTGATGATTATTTGAACTCCTTTTTGTGACTGATTATACAATGGAGATGTGATACAGCCAGGTGTACTTATATTGAGGCAAGTTTAGAATAAATGATCCTGACAATAAAACAAGAGGTCAAAGCCAAAGTATATATTGTATCAAGCAAAGTAGAAATCTAAAATGTAGATCATCTGTAGTTCCCCCAGTGGAGACATACCTGTCTGCTATTGTACTCTGTACTGTCTGTTTGTTACTGGGGCCTCCCATGAGACCATTCTAACCAGACCATGTCCATGTAGGGTAAATAGATTTTCACCAGCACAGAAAACAATAGAGTAGAGCTTCTCACATTTTGCATGGCTAAATCTTTTTTTCTTAGTGCTTATTGGTTGAATACAAAAGTTTAGATAGGAGGAAATTGAATTGTTTGTtcgaagaaaaaaaaagtattattaaaaaaaaaaatgaagtaaTATATATGTCTAAAACATTGTTCCTTTTCTTGACGAGTCACACATGAATGGTTATAGTAACGTCATGTTCCTAGAGAGGATGTCTGGCGAAATCTGATTAACACATCATTGTGTTATAGTGCAGGCATATGGACATTTTTCTGTGACGGTCGTCCCAAAGAATAGTGTGAAATACTAGACCAAGTATTACGTATGTAAGGTATTTACGTCTGTAAAGTGATCCAGTGTGAACCTCTCTCTGGACCTGACCCAAATCTGACCCAAATGAGCAGCACAACACACTCTCGACTACTTACACCCGCCATCTGCagggagtgatgtcactgtgatGTCAGCACTACAGCTGCATGTCCACTTTTACATCTTCTGGGAATCAACACTTTGTCAAATAAAAGTCTCTTCTGGAGAATTCAGTTCTACTTTATCTCACCAGCTGTTCAATATCTTGTCTCTTTGCCCCAGATTTTCTACAGTTTAACATGAACAGTGTCAGTCGGTTGTTTtgtgtgatgctgccaccaccctaTAATACAGGAGCTGTGGGCCAAACTCTCACCTCCAGTGGTGCCTCTTTTTTTTTGATTGCCGTCttttgataaataaaaaaaaatgataaaaaaaaacaaaacaaacaggaaaacTAAGACATGGCCTCTTTGTTAACAAACTGTTTGTAGAGCATTTTTAAATGTCTTGAATTGTGGAGCTGCCATCAGCGCAGTGTGATCTCTCATACATTGTTTTTGATAGAATGCCAGGGTAACTATATCATAGTGCAGACAtactctctttctgttctctctgaaTGAATCTCTTGATGGAATGAATTGGGTTACTGGGAAATGTACAACGTCCTCTTTAATGGTGTTTTTTGCAATGTCACAGTGGCTTGTTTCAGTGCTTCACTCTATGTATTAACCAATTCCCTTTTGCAATTAAAAGCGTTGTGTTCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015390 lncRNA upstream 34681 45057850 ~ 45166003 (+) False G892532
TU1015389 lncRNA upstream 34681 45164570 ~ 45166003 (+) False G892532
TU1015391 lncRNA upstream 34681 45164570 ~ 45166003 (+) True G892532
TU1015444 lncRNA upstream 45162 45154460 ~ 45155522 (+) True LOC110534924
TU1015365 lncRNA upstream 75938 45120686 ~ 45124746 (+) False LOC110534027
TU1015494 lncRNA downstream 46999 45323969 ~ 45326891 (+) False LOC110534030
TU1015490 lncRNA downstream 48264 45325234 ~ 45326891 (+) False LOC110534030
TU1015495 lncRNA downstream 48264 45325234 ~ 45326891 (+) False LOC110534030
TU1015498 lncRNA downstream 48264 45325234 ~ 45326891 (+) True LOC110534030
TU1016878 lncRNA downstream 107547 45384517 ~ 45384723 (+) True G893876
XR_002475185.2 mRNA upstream 45020 45154412 ~ 45155664 (+) False LOC110534924
NM_001124308.1 mRNA upstream 50999 45125552 ~ 45149685 (+) False LOC100135968
XM_036989317.1 mRNA upstream 50999 45137385 ~ 45149685 (+) True LOC100135968
XM_036990424.1 mRNA upstream 77609 45040762 ~ 45123075 (+) False LOC110534027
XM_021618664.2 mRNA downstream 13587 45290557 ~ 45325874 (+) False LOC110534030
XM_021618665.2 mRNA downstream 26085 45303055 ~ 45325874 (+) False LOC110534030
XR_005034467.1 mRNA downstream 85263 45362233 ~ 45362286 (+) True LOC118937071
XM_036934576.1 mRNA downstream 161221 45438191 ~ 45443347 (+) False LOC118936925
XM_036934575.1 mRNA downstream 163754 45440724 ~ 45443347 (+) False LOC118936925
TU1015341 other upstream 189835 45008834 ~ 45010849 (+) True G892499
TU1014996 other upstream 541193 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 1119274 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 1120488 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 1260127 43938412 ~ 43940557 (+) True G891951
TU1016991 other downstream 277267 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 292482 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 313389 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 345287 45622257 ~ 45643556 (+) False LOC110534042
TU1017187 other downstream 624075 45901045 ~ 45901811 (+) True LOC110534056

Expression Profile