RNA id: TU1015495


Basic Information

Item Value
RNA id TU1015495
length 1556
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC110534030
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45290557 ~ 45326891 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGACACAACACAAGGACAAGTGTCTATCCTGTCTCATACTCTCTCTGTCCCAGGTCTGGACTTCAGTACAGTCCTAAGGGAAACTGTGGCTACTATGGAACAGGCAGAGAATGTCACAGGGATGGTTATAAGTAAGCTATTGAATTAAGAATCAAGAAACAGTCTATATTTATGTAGAGAGAGAGCTTTTCAGAGTACTTGTCCAGTAGCCTCTGCTATGGGATGGTAGGAATGGCAGAGTGAAGGGGAATGTAATCCTCTTGTTTTAAATGGTCCGTAAGACAGGTTACAATTATACAATGGCACTCAGTCATCAATCCAAAAACATTTTCATGGACAAATGATTAACTAACACCCACCAATCTGCGGCCACACAGCAAAAACTCACAGAAACGCATAGAAACAGATACAACTAAACTCACACAGTACTTAGGAAAGTTTAGCTGCGACAAGACACTGGAGTAATGAGTCTTAACTCACGCTGAGGAAGCTAAAGAACGGCATCCCATTAAAAAAACTATATATACACTCCTCATGGatggacaaagacagagagaaagagagagagagaccgacagacaaacagacagacagacagagagacagacagacagagagacagacagacagacagagagagagagagacctacagacaaacagagagacagacagacagacagacagacagagagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagatgaacatGTGCACTAACTCAGGGATTGTGCTCATTTGAACAAATGGCTTCTGCTTCAGATACATTTAGGTAAATTCACAGATCAGAGGTTAAAGCAAAAGTAAGGCTCACTGATGTGAAACAAATGGTAACATTGGCAAactgaaaaatattttttttttgttggcagGCTATCCCCACATAGACACTAATACAGTCTAATCTGTCCAGTCTAGTCTGTCCAGTCTAGTCTGTCCTGTCTAGTCtgtccagtctctccagtctagtCTGTCCTGTCTAGTCTGTCCAGTCTAGTCTGTCCTGTCCAGTCTAGTGTCCTGCAATAGATTGTGACACCTTCAGAATCGTTCTAACGGACCACGCGTCTCAGAATCTCTGATTGGAAATTGACTCTGGACAAACAATTACAAATACATTAATTTACTAAATTGATTTTAACTAACTACAGGTAGTAAGTCCATAACATGGGTTTCATACTTGAACTTGAAGAATTGGAAAACGTTTTCAAAGCTTTTGACTTTGGAAACGTGAACACTCTGTGGCCCATCCGAGAGGCAGTAGTGATTGAATCAGCCTCCACTACAGCCTTGGCCCAGCCATTCTCTATGTCAGATCTCTGAACATCTAGGAAGTTTAGGGTATCCAAGGAATGACAGCTATGTCCTGGAGTAAGCCAAATGGCTtggaaaacaaacacacacaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015467 lncRNA upstream 44341 45193997 ~ 45280893 (+) True G892607
TU1015389 lncRNA upstream 159231 45164570 ~ 45166003 (+) False G892532
TU1015391 lncRNA upstream 159231 45164570 ~ 45166003 (+) True G892532
TU1015444 lncRNA upstream 169712 45154460 ~ 45155522 (+) True LOC110534924
TU1015366 lncRNA upstream 200488 45122225 ~ 45124746 (+) True LOC110534027
TU1016878 lncRNA downstream 57626 45384517 ~ 45384723 (+) True G893876
TU1016882 lncRNA downstream 60231 45387122 ~ 45387370 (+) True G893880
TU1016883 lncRNA downstream 60550 45387441 ~ 45387735 (+) True G893881
TU1017007 lncRNA downstream 272891 45599782 ~ 45599984 (+) True G893991
TU1017015 lncRNA downstream 281091 45607982 ~ 45608316 (+) True G893999
XM_036990428.1 mRNA upstream 48264 45200684 ~ 45276970 (+) False LOC110534029
XM_036990429.1 mRNA upstream 48264 45200684 ~ 45276970 (+) True LOC110534029
XR_002475185.2 mRNA upstream 169570 45154412 ~ 45155664 (+) False LOC110534924
NM_001124308.1 mRNA upstream 175549 45125552 ~ 45149685 (+) False LOC100135968
XR_005034467.1 mRNA downstream 35342 45362233 ~ 45362286 (+) True LOC118937071
XM_036934576.1 mRNA downstream 111300 45438191 ~ 45443347 (+) False LOC118936925
XM_036934575.1 mRNA downstream 113833 45440724 ~ 45443347 (+) False LOC118936925
XM_036934577.1 mRNA downstream 113833 45440724 ~ 45443347 (+) True LOC118936925
XM_021618673.2 mRNA downstream 118187 45445078 ~ 45450123 (+) False LOC110534037
TU1015341 other upstream 314385 45008834 ~ 45010849 (+) True G892499
TU1014996 other upstream 665743 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 1243824 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 1245038 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 1384677 43938412 ~ 43940557 (+) True G891951
TU1016991 other downstream 227346 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 242561 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 263468 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 295366 45622257 ~ 45643556 (+) False LOC110534042
TU1017187 other downstream 574154 45901045 ~ 45901811 (+) True LOC110534056

Expression Profile