RNA id: TU1016991


Basic Information

Item Value
RNA id TU1016991
length 674
RNA type TUCP
GC content 0.53
exon number 3
gene id LOC110534033
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45553481 ~ 45592329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCGTGTCAGATGTGGTCGGTGTTGCGGCCAATGGGTACACGGTCCAGCTGACGGTGCCACTGAATTCCCAGTTACACGTTGTTTTTTTTTGACCAACACAACCGAAGGAGTTCGTTTATATTACGGATAATCTGTATGCCATTATGAATTTCATATCCAGTCGCATTGCCCCACTTTGGCTGGTCCTGCTGGAATGTGTGCTTCTGTCGACAGCAGAGGAAGAGGTCCTGATGAACACCAGGACCGAGACTTCAGATCTCAGATGGACCATCTACTCCCGTGACAACCCTCTGTGGGAGGAGGTGAGTGGTCTGGACGAGGAGAACAACAGTGTGAGGACCAATCAGATCTGCCAGACGGACGGCTTGTCCAGCCATTGGCTGCGCAGCGGGCTGATCCAGCGGCGGGGAGCGTCCCAGGTGTACGTGGAGCTGCGCTTCACCATGATCGAGTGTTCGTCCAGTGTCACACACCACCGCAGCTGCAAGGAGACCTTCAACCTTTACTACTACCAGGCCGACTCTGACGAGGCTACACCCACTCACCCATCATGGATGGAGAACCCCTATACTAAGGTACACAGCTAttgtgtacacacatacacacacacacacacacacacacacacacacacatcaacactctGCAACACATTCCTCATGGATGAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016883 lncRNA upstream 166502 45387441 ~ 45387735 (+) True G893881
TU1016882 lncRNA upstream 166867 45387122 ~ 45387370 (+) True G893880
TU1016878 lncRNA upstream 169514 45384517 ~ 45384723 (+) True G893876
TU1015494 lncRNA upstream 227346 45323969 ~ 45326891 (+) False LOC110534030
TU1015490 lncRNA upstream 227346 45325234 ~ 45326891 (+) False LOC110534030
TU1017007 lncRNA downstream 31190 45599782 ~ 45599984 (+) True G893991
TU1017015 lncRNA downstream 39390 45607982 ~ 45608316 (+) True G893999
TU1017018 lncRNA downstream 43989 45612581 ~ 45612904 (+) True G894002
TU1017021 lncRNA downstream 48671 45617263 ~ 45618561 (+) True G894005
TU1017022 lncRNA downstream 50030 45618622 ~ 45618937 (+) True G894006
XM_036990435.1 mRNA upstream 4807 45459660 ~ 45549430 (+) False LOC110534036
XM_036990433.1 mRNA upstream 4807 45481230 ~ 45549430 (+) False LOC110534036
XM_036990431.1 mRNA upstream 4807 45487237 ~ 45549430 (+) False LOC110534036
XM_036990432.1 mRNA upstream 4807 45487237 ~ 45549430 (+) False LOC110534036
XM_036990434.1 mRNA upstream 4807 45487241 ~ 45549430 (+) False LOC110534036
XM_036990440.1 mRNA downstream 53572 45622164 ~ 45654911 (+) False LOC110534042
XM_036990438.1 mRNA downstream 60545 45629137 ~ 45654911 (+) False LOC110534042
XM_036990439.1 mRNA downstream 60947 45629539 ~ 45654911 (+) False LOC110534042
XM_021618674.2 mRNA downstream 97772 45666364 ~ 45673837 (+) False LOC110534038
XM_021618677.2 mRNA downstream 97773 45666365 ~ 45673504 (+) False LOC110534038
TU1015341 other upstream 543388 45008834 ~ 45010849 (+) True G892499
TU1014996 other upstream 894746 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 1472827 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 1474041 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 1613680 43938412 ~ 43940557 (+) True G891951
TU1016992 other downstream 860 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 21767 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 53665 45622257 ~ 45643556 (+) False LOC110534042
TU1017187 other downstream 332453 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 547693 46116285 ~ 46117943 (+) True G894204

Expression Profile