RNA id: TU1016992



Basic Information


Item Value
RNA id TU1016992
length 1649
RNA type TUCP
GC content 0.57
exon number 5
gene id LOC110534033
representative False

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45553481 ~ 45592329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGGAAGTCATTTAATGTCGAGGTAAATGAAATGAAAAACGATTTCAAAGGTTTAAAAAGGAAAGGAATATTAAACTGTACTTTTGGGTCtcgaaccggttcagaactttcTTTTTCTGGTCGGAACAGTGCAAAAAAATGacggttctgttcagaacgaaacgTTTTGGAAAACAATTTCGGTTCCACACACAGCTGCTCTACACACACCGACATATACAGATATACACGCCCGTTATGGATGGAATCCACTGGAATGTGAGTAGGCTGTTGGGATGTTGGATGCCATGTAGAGATATTACTTCCTGTGTTTGTGTTGACCGcctgcctctccctcctgtcATCCTGTAGGTGGACACAGTGGCAGCAGACTTCCTGCTGAGGAAGGGCGGGGAGCGTAAGTTCAATGTGAAGACCCTGCGGCTGGGGCCTCTGTCTAAGAGGGGCTTCTACCTGGCCTTCCAGGCACAGGGAGCCTGCATGGCCCTGCTGTCTGTCAGGGTGTTCTTCAAGAAGTGTCCCGCCCTGGTCAGCTCCCTGTCCTCCTTCCCTGAGACCGTGCCCCGTACCCTCGTACAGGAggcccagggtgtgtgtgtggacaacgCCGCCCAGCAGGGGCCCCGGCCACGCCCTCCCAAACTCTTCTGTGGAGAGGACGGCCAGTGGGTGGGCCAGCCCACTACCTCCTGTGGCTGCCTGTCCGGATATGAGCCCGCTGATGGACACAGCCGCTGCTCAgCCTGTCCTGTGGGTCAGTTTAGGTCTGCCTCGGGGGGCCAGTGCCAGGCCTGTCCAGGGTTTAGCCATGCTATGGTGACGGGCTCACCTGTGTGTCAGTGTCGTCCAGGATACCTCCGCGCTGACTCGGACACCCCAGACACCCCCTGCACCAGACCCCCCTCTGCCCCGCGAAGCATCGTCACCCAGATTAACGACACCACGGTGACCCTAGAGTGGAGCGAGCCCCAGGACAGTGGTGGCCGGACTGACCTGAGCTACTCTGTGGAGTGTTCTCTGTGTGGGGCCCCCTGGGGCCCCTGCTCTCCCTGCGGGGACAGTGTCAGCTACCGGCCCTCTCAGCGTGGCCTGCTGGGCCGCAGGGTGGTGGTCTGGGGCCTCATGCCTCACACTACATACACCTTCTCTATCCAGGCCCTCAACGGGGTAACCCAGACCAACGGCAAGGGGGCACCCAGCGACAGTGTCAACATCACAACCAGTCATGacgTTCCAGTTCTGGTGTCTGTGATCAGGAAGAGTATCTCTACAGAGAGCAGTCTTACTCTCCACTGGTCAGTTCCAGCCCAGCTGCACTACACCATCCTGCAGTACCAGCTACGTTACTGTGAGACGgAGCGTCGAGGTGAGGAGCAGGAGCAGTTGTGTAGCTACAGGGAGAGTGACAGTAACCAGGTGGTGCTGAGTGATCTCCGCAGGGCCACTCAGTATGAGGTGCAGGTCCGGGCTCGCACCATGGCCGGCTACGGCAGCTTCAGCCCAGCAGCCTCCTTCCGCACCATGCCTGACGGTAAGGAAAGGCCCAGGCTTCACTCTTTCAGGGAGGCCTATCCATATCCAGGCTCACAAAGTATTCTGGGGGTTTtcactttttttgtgtgttcttTCCGCCTTCTTATTAATTTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1016883 lncRNA upstream 181717 45387441 ~ 45387735 (+) True G893881
TU1016882 lncRNA upstream 182082 45387122 ~ 45387370 (+) True G893880
TU1016878 lncRNA upstream 184729 45384517 ~ 45384723 (+) True G893876
TU1015495 lncRNA upstream 242561 45325234 ~ 45326891 (+) False LOC110534030
TU1017007 lncRNA downstream 15148 45599782 ~ 45599984 (+) True G893991
TU1017015 lncRNA downstream 23348 45607982 ~ 45608316 (+) True G893999
TU1017018 lncRNA downstream 27947 45612581 ~ 45612904 (+) True G894002
TU1017021 lncRNA downstream 32629 45617263 ~ 45618561 (+) True G894005
TU1017022 lncRNA downstream 33988 45618622 ~ 45618937 (+) True G894006
XM_036990431.1 mRNA upstream 20022 45487237 ~ 45549430 (+) False LOC110534036
XM_036990440.1 mRNA downstream 37530 45622164 ~ 45654911 (+) False LOC110534042
XM_036990438.1 mRNA downstream 44503 45629137 ~ 45654911 (+) False LOC110534042
XM_036990439.1 mRNA downstream 44905 45629539 ~ 45654911 (+) False LOC110534042
XM_021618674.2 mRNA downstream 81730 45666364 ~ 45673837 (+) False LOC110534038
XM_021618677.2 mRNA downstream 81731 45666365 ~ 45673504 (+) False LOC110534038
TU1016991 other upstream 860 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 558603 45008834 ~ 45010849 (+) True G892499
TU1014996 other upstream 909961 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 1488042 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 1489256 44077717 ~ 44080196 (+) False LOC110533983
TU1016990 other downstream 5725 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 37623 45622257 ~ 45643556 (+) False LOC110534042
TU1017187 other downstream 316411 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 531651 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 1042658 46627292 ~ 46700540 (+) True G894437

Expression Profile