RNA id: TU1017032


Basic Information

Item Value
RNA id TU1017032
length 1722
RNA type TUCP
GC content 0.47
exon number 2
gene id LOC110534042
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45622164 ~ 45654911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAGCCCAGCAGCTGCCAATAACACTCACCGCTGGTCAGACGCCTGTGCCAGCTGCTGGCTGGAAGCCACCCTTTCGCTCTAGAAGCCAATGGAAGCCGGAGAGCATGAACCTCGGTTGTTATAACACATCTGCTATTCACGAGGTGGATAATATCTGAAATGATTTTGGAATCAATTGACTGTTTTTTTTACACTAGTGAAAGAGTCTGAGGTTGTCAATGCCCCAGGAAAAGGTCAGAGAACAGATCTCTAGACTCCTTGGCTGAGCTGCTATTGACATGGCTGTAATCTCCAGAGCTGGAGATAAAGATTTGACCTCAAAATGGGACTACAGCTGATTGATGTGTAAGTAGAGGGGTTTGGTCTCCCTGTCTCCCGGTCCTCTCTTATTTTGCTTCATCTGGGTCTCCTGCTAATCTGGGCAACTGTAAACTGGTGGGTCTTCAACATAAATCCCCCTCTGTCCCTCAtctgagagggagataaagaTTCAGATGGCTGTTTCTGTCCATCTTCAGCAAAATAAGCAATGCTCATCAGTCCATCTCTCTTGGATCTGTTTTCCCAGTGTTTGGATGTTGTTGTCCCTTTAGGATTCATTTAGCTGGATTCTGGATTGTTACGTACGCCTCTTggaggagggaacgcaacaccctgctacatctcaactCCCCGTGGAGCGAAAGACATCTGAAAAAAGAAGTCAAGACTTGTTGACGTTTCACAGGTGTTTTGAATAAGCGGGACCAGtgaatactttaaaaaaatatatattctgtcTTCAATCATATCCTACTTGTCTAAACCTTGCATGTGAAGGATCAGATCTGTAACAGTGACACTGGTTTACGTACAAactttttgttgttattcttttGCATTAATAACACATCTGTATCATCAAGGATTCAGTCTCCAGTCTACTTTTTGGTCACATGAATGCAAAAGAAAGAGGACTTGCAAGGCAACAAGTAAGAAAGTCAGATTTGCTAAGTCAATTTCACCTCAGTCAAAATACTTTTATCAGTCATGTTTGCTGGAGGCAGGGGTGGCGGTGGCAAGGGTGGGAAGTTTTCGGTGGAGGACCTGTATGGCATCAGCAAGAAGCCCAAATCTTCGTCATCCGCTGGGGGCACAACAGCCAAGAGAGGGTCCAGGAGAGCCCAGCAGAGGAGTGAGTCAGAGATGGCCACCCAGATCCTGGAGGCCGCCCACAGGCTGGTGGAGAAACGCAGACTGGAACTGTACCTCAGAGAATGTGCaatctccctgactgactgtgaGGCTGAACGCAGTGCCATGATATACagGCTATTTGTGGCGaacgcaggcaggcagacaggcagaggggCGAGGCGCTGGAGATAAAAAGATGGCGAGCAGCAATGAGTTCCACTGCAGTTCTGCTGCCTTTCCAGCCGGCTTATTAGAGTGGAAGAGAGCAtgcgtggaggagaggaggagggcgagGACGAAACCCACAGAATTTCCAGTGGCACACACTTGCATGACCAGAACTCACTGCAGCTCTCTGATCCCACTTATATCCTGCCCTTCAAACACTCAGCTGTCTGGATAATCAGATGTGGCAGGCCCAGCACTGGGCTCTAGAACCATATAAACCATTTCAATCAGCCCCATGTTATTACTTATATGCTGAGTATATACAGCTTCATCTGGAGTAGGATTGAACCCACCCAGTGCCCTCCCAGTGTTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017023 lncRNA upstream 2127 45619903 ~ 45620130 (+) True G894007
TU1017022 lncRNA upstream 3320 45618622 ~ 45618937 (+) True G894006
TU1017021 lncRNA upstream 3696 45617263 ~ 45618561 (+) True G894005
TU1017018 lncRNA upstream 9353 45612581 ~ 45612904 (+) True G894002
TU1017015 lncRNA upstream 13941 45607982 ~ 45608316 (+) True G893999
TU1017042 lncRNA downstream 14262 45657818 ~ 45658048 (+) True G894021
TU1017051 lncRNA downstream 33046 45676602 ~ 45676897 (+) True G894028
TU1017091 lncRNA downstream 46182 45689738 ~ 45747021 (+) True G894037
TU1017129 lncRNA downstream 141113 45784669 ~ 45785365 (+) True G894068
TU1017128 lncRNA downstream 141967 45785523 ~ 45785778 (+) True G894067
XM_021618669.2 mRNA upstream 29928 45553481 ~ 45592329 (+) False LOC110534033
XM_021618670.2 mRNA upstream 29928 45553481 ~ 45592329 (+) False LOC110534033
XM_036990431.1 mRNA upstream 72827 45487237 ~ 45549430 (+) False LOC110534036
XM_021618674.2 mRNA downstream 22808 45666364 ~ 45673837 (+) False LOC110534038
XM_021618677.2 mRNA downstream 22809 45666365 ~ 45673504 (+) False LOC110534038
XM_021618676.2 mRNA downstream 23020 45666576 ~ 45673837 (+) True LOC110534038
XR_005053677.1 mRNA downstream 58689 45702245 ~ 45703069 (+) True LOC118966785
XM_021618681.2 mRNA downstream 61817 45705373 ~ 45708059 (+) False LOC110534041
TU1016990 other upstream 29948 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 37623 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 53665 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 611408 45008834 ~ 45010849 (+) True G892499
TU1014996 other upstream 962766 44655558 ~ 44659491 (+) True G892191
TU1017187 other downstream 257489 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 472729 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 983736 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1396958 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1498488 47142044 ~ 47151549 (+) False LOC110511048

Expression Profile