RNA id: XM_021618674.2


Basic Information

Item Value
RNA id XM_021618674.2
length 1933
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110534038
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45666364 ~ 45673837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGTAGGAGGCGCCTTCGTGAAAACCAATGATAAATTCATGATTTTATGGGGAGTTTCACACGGTCCTGGGGTTTGCTGTCGCAGTTGCTGCTATTTCATTTCATATTGACAAGCAACATGAAGCATATTTTCTTATTAATTTGCATACGTGTGTTCGTTGGTTGTGGCGGTGATGTTATAAGAACAAGGAAAGTGTCTTCAGTTTTCTGTACTTTCAAAGAGAAAACGTACAGTCCAGGAGACAGCTGGCATCCTTATCTGGAACCCTTTGGATTCATGTTTTGTATGCGCTGTTCCTGCACTAAGACAGGCCATGTGAAATGTAACACAATTAAGTGTCCTACTCTGCAGTGTGAGAACTCAGTGACTGACTCTGAGCAGTGCTGCCCTCGCTGTACAGATGAGCCTAGGATTCCAGCTGGCCTGAGAGCCCCGGTGAAGTCCTGCAAGTATAATGGAACTATCTACCAACCAGGGGACACCTTTGCCAACCACGACCTCTTCCCATCTCGCCAAACCAGCCAGTGTGTCATGTGTACATGTTCTAATGGAAATATCTTCTGTGCTCTGAAAACTTGCCAGCCACTGACCTGCTCCTCGCCATTCTCAGTCCCAGATACCTGCTGTCTAGTGTGTAAAGATGGCGGCATTAATGGGTACACATCAGTGGAGCATAGAGGCCAACAGCTGAACCGAGGCGTGAGGCATTCATTGGACCAGTGTGCTGGAGAGCAGCTCCAAGGGCGCTCTGTCCGTTCTACTCCATCCACAGTCAGGGGTACTCCCAGAGGCCTGAGCCTGTCCAAACTCCACTTCAAAGGTGCTGCAGAGACCACTGTGAATTTCCTGCTGCAGAAAAACCACCAGAAGGCATGCCAATACAGCGGCAAGACCTACTCTCATGGTGATGTGTGGCACCCAGTCCTGGGGAAGGTCCTGGAGTGCATCCTGTGTACCTGTAAGGATGGCATGCAGGACTGCAAACGCCTCACATGTCCCAGCCAGTATCCATGCCAACATCCCATGAAAACCGAGGGGAAGTGCTGCAAGATTTGTCCAGAACTTAAAACTGAGAGCAACGGGACTGACTGTTACATGAACACGAATCTTGGACATGACTATAACAAACTCTCGGTGTACAAAGTTAAGCCGCCGTCAAAGGATCGGACCGAGGACACCGTTAGGATAATTGCTATTGAAAGTCAAGGGACTGCTGAAGTTGAAGTGCAAGTATGGAAGACTGTAGGAGGAGTTTTACAATTAATGGAAACGGGAGAAGTTCTGAAGAAAGATCTTCTAGATAATCCAGATAACTACACCTTACTGGCAACATTAGATGAAGAGACTTGGAAAAGATTCAAGGAGGAAGAAGACAATCAGAAGAGATTTCCCAATCCCAGGACCTGTGAGGATGGGATCAAGGAGTTGCGAGGCGTTCTTGCACGTAACGACGAGGCTAAACGTTATGATATTGTTGAGCTCTACCTGAGGCGAGAATTCCAGCGCAAGACGGGCTGTTGTTTCTCCTTTGACTATCCTCCAGTGAACACAGTCGACCAGGAGGATTTCGGCTTAATAAATTGTGCCTGTAATTTCGATTTGTTCTCCAGTGTTATAGTTTGTTTTCTCAAGGGTTGTAATGGCCTAACGGAGATGAGCACAACAATAGAGCACTGTTCATTTGATATATGTAAGTCAGGAGTTGGAAGGACACCAACATTTTCCAATAAAGAGAACTGAAGAAGAGATGTCTCCGGGAAGGAATTATATTGAAAAATAAGAATAATATTGCTGGAGGCCCCAGTCTTTTGAAAAAAAAAGGTGTAGAGCACAACTGTAACAGGATTGTCAAGTAGTTAAACATAATTTGATTATTTGCAGGATGTATAATCTACCAAAACCAAGAAAAATAAACCCTTGGTCTTTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017042 lncRNA upstream 8316 45657818 ~ 45658048 (+) True G894021
TU1017029 lncRNA upstream 11461 45631751 ~ 45654903 (+) True LOC110534042
TU1017023 lncRNA upstream 46234 45619903 ~ 45620130 (+) True G894007
TU1017022 lncRNA upstream 47427 45618622 ~ 45618937 (+) True G894006
TU1017021 lncRNA upstream 47803 45617263 ~ 45618561 (+) True G894005
TU1017051 lncRNA downstream 2765 45676602 ~ 45676897 (+) True G894028
TU1017091 lncRNA downstream 15901 45689738 ~ 45747021 (+) True G894037
TU1017129 lncRNA downstream 110832 45784669 ~ 45785365 (+) True G894068
TU1017128 lncRNA downstream 111686 45785523 ~ 45785778 (+) True G894067
TU1017131 lncRNA downstream 114337 45788174 ~ 45788596 (+) True G894070
XM_036990440.1 mRNA upstream 11453 45622164 ~ 45654911 (+) False LOC110534042
XM_036990438.1 mRNA upstream 11453 45629137 ~ 45654911 (+) False LOC110534042
XM_036990439.1 mRNA upstream 11453 45629539 ~ 45654911 (+) False LOC110534042
XM_021618669.2 mRNA upstream 74035 45553481 ~ 45592329 (+) False LOC110534033
XM_021618670.2 mRNA upstream 74035 45553481 ~ 45592329 (+) False LOC110534033
XR_005053677.1 mRNA downstream 28408 45702245 ~ 45703069 (+) True LOC118966785
XM_021618681.2 mRNA downstream 31536 45705373 ~ 45708059 (+) False LOC110534041
XM_021618682.2 mRNA downstream 31536 45705373 ~ 45708059 (+) True LOC110534041
XR_005034355.1 mRNA downstream 42536 45716373 ~ 45716966 (+) True LOC118936928
XM_036990445.1 mRNA downstream 50980 45724817 ~ 45740842 (+) False LOC110534032
TU1017032 other upstream 22808 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 74055 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 81730 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 97772 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 655515 45008834 ~ 45010849 (+) True G892499
TU1017187 other downstream 227208 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 442448 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 953455 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1366677 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1468207 47142044 ~ 47151549 (+) False LOC110511048

Expression Profile