RNA id: XM_021618682.2


Basic Information

Item Value
RNA id XM_021618682.2
length 2337
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110534041
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45705373 ~ 45708059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACACAGCACAAGCGATGTGCCAACTACGCTTCTATTTCACGACACGCTTCCAAATTAGCGTACAAATTGTAAGAGAGAGATAAACTTGGACCGTTTTAACTGGGTCTCACGACACAACGGTGTGATTTGTAGCCTAAAAAGCCAGCTCCCGTAAGAACCAGGACATTTAGCTATGGGGAATACCTCATCAAGGAGTTATTTCCCGGGAATCAAAATGCAACCTGCTAAAACGACTCTGTTCAAACGGGAGCAAACTGGGACGACATACAGAATCCCAGCTCTCATCCACCTAAAAGAGAGTCAGACATTCCTTGCCTTTGCAGAGAAGCGCTCTTCCCCCAGTGACATTGATGCAAAACTTATTGTTATGAGGAGAGGCACTCAACAAAATGGATCCACTCAGTGGTCAGAATCCCAGGAGCTATTATCAGCATGTTTACCAGACCACCGCACCATGAACCCCTGCCCGGTGTATGAGAAGAATACCAAGACTCTATTCCTATTTTTCATCTGCATTTTGGGTAACACTCCAGAGCACCATCAGATCTGTACAGGCAAGAATAAGGCACACCTGTGTTACATCACCAGTAATGATGAGGGCCAGAACTGGAGCCAGACAAAGGACTTGACAGAGAGTGTGATTGGCAAAACGGTCAGAAGGTGGGCTACATTTGCTGTGGGACCAGGCCATGGCATTCAAATGGAGAGTGGAAGATTGATCATTCCTACCTATGCCTATTATATCCACTGCAAATGCttctccttccccttccccttcacgGTACAGCCACATGCTCTCTCAATATACAGTGACGACTTCGGTCAGACATGGCAAATGGGCAGGATGCTTCAAAGAAAGTCCTGTGAATGTGAGATGGCAGAGATCATAGACCACGAGGGCAGCAGTCACCTGTACTGCAACGCCCGCCATAGAGGTCACAGAGTGGAAGCTTTGAGTGAGAGCAGTGGGGTTTACTTTGACAAGCCCCGCTTGGCTCCAAGGTTAGTGGAGCCGTGCCATGGTGGTTGCCAAGGCAGTGTGATTGGCTTccctgcccctgagcaaggtGAAGAGGGTATGGGTGGTACCACATTACCACCACTGGCCTCAGACACGCAAACCTGGCTACTCTTCACCCACCCGACCAATAAGAGGACAAGGAAAGACTTGGGAGTGTATTTGAACCGTTCCCCACTGCACACGTCAGGTTGGGACCGGCCCTGGATCGTCCACAGTGGACCCAGTGGCTACTCAGACCTGGCCTACATTGAGGACACGGAGCACTTTGCTTGCCTGATGGAATGTGGCGAGAATAGTGAGCTTGAACAGATTGCCTTTGTGTCTTTTCCCCTCAGTGATGTCATGCAGACCGTTGATGAGAAAGGAAATACCTTCTAGTTGTGTTTTTATTTAAGTACTACACTCCAATTCCAATCAGATTCCGTGGTCAGTTGAGGCACACAATCATCTTTGTCCTCAATTTATATAAAAAGAAGCATtctgaaaatgtatttatatcaAAGTTGTTTCGTGTAAAAAAAGGCAACTGACGCTACGATTTCTTGAAATGCGATCATAGTTAAATcaaatgtaatataatatgtagATGTGATCATTTTATGAAGTCAGACTGTATGCACTGCAATGCATGCTGTCATTGGATGCAATCTCTAAGCAGTGGTATATTTAAATGGCATACTTTTACTTGCATTGTACATGTACATTGAAACTCCTTTCACCTCAATGTAGAGTCATGCAATTCCTTATGTTTGCCAAGCACCCTTTGAAGACTACAACCACCCACAGGCCACGATCAGGCAACACTTCTGCTCCTCAGGCGTTACTTTAAGTCATGCGCCCTATTGAATGAACAGACATCCCTGTATCATCAAGTGGTTGCTCATCTACTGTGACTCATTTGTTCCAACTGCATTGACTTCCTAAACCCACACTCCATTCTGGTCTTTAAGCACTTTCTATCTCATGTTGGACTGTCCACAAACAGTACACATAGCACTGTAAATGTAGGACTACTTAATTTCTAAATgtttttttgtaaaaaatgtatgcTGTTGTTCAGACCCTATGTAATGCACTGACAGTGAGCCTCTCTGTAGTGCCTGCTAATGCACAGGTGATAACTCCAATGTTCAAAATGAGTTGAATATGTTCCTTATCTCTAAATGATGCTACAATGGTAGTTCTGCCTCAACTACCTCCACATTACTATCCTGCCTGCATCCTTGGCTATGCAGAAGATGCATAAAAACATTGTTAATCATTCATGTGAATGGCATGCAGAGCTCTCTTTTGAAAATACAATTCTAACAAGCT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K12357 NEU2_3_4; sialidase-2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017051 lncRNA upstream 28476 45676602 ~ 45676897 (+) True G894028
TU1017042 lncRNA upstream 47325 45657818 ~ 45658048 (+) True G894021
TU1017029 lncRNA upstream 50470 45631751 ~ 45654903 (+) True LOC110534042
TU1017023 lncRNA upstream 85243 45619903 ~ 45620130 (+) True G894007
TU1017022 lncRNA upstream 86436 45618622 ~ 45618937 (+) True G894006
TU1017129 lncRNA downstream 76610 45784669 ~ 45785365 (+) True G894068
TU1017128 lncRNA downstream 77464 45785523 ~ 45785778 (+) True G894067
TU1017131 lncRNA downstream 80115 45788174 ~ 45788596 (+) True G894070
TU1017134 lncRNA downstream 80637 45788696 ~ 45788966 (+) False G894071
TU1017135 lncRNA downstream 80637 45788696 ~ 45788998 (+) False G894071
XR_005053677.1 mRNA upstream 2304 45702245 ~ 45703069 (+) True LOC118966785
XM_021618674.2 mRNA upstream 31536 45666364 ~ 45673837 (+) False LOC110534038
XM_021618676.2 mRNA upstream 31536 45666576 ~ 45673837 (+) True LOC110534038
XM_021618677.2 mRNA upstream 31869 45666365 ~ 45673504 (+) False LOC110534038
XM_036990439.1 mRNA upstream 50462 45629539 ~ 45654911 (+) False LOC110534042
XR_005034355.1 mRNA downstream 8314 45716373 ~ 45716966 (+) True LOC118936928
XM_036990445.1 mRNA downstream 16758 45724817 ~ 45740842 (+) False LOC110534032
XM_036990447.1 mRNA downstream 16758 45724817 ~ 45740842 (+) False LOC110534032
XM_036990449.1 mRNA downstream 16758 45724817 ~ 45740842 (+) False LOC110534032
XM_036990450.1 mRNA downstream 16758 45724817 ~ 45740843 (+) False LOC110534032
TU1017032 other upstream 61817 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 113064 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 120739 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 136781 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 694524 45008834 ~ 45010849 (+) True G892499
TU1017187 other downstream 192986 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 408226 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 919233 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1332455 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1433985 47142044 ~ 47151549 (+) False LOC110511048

Expression Profile