RNA id: XM_021618696.2


Basic Information

Item Value
RNA id XM_021618696.2
length 3676
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110534052
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45792208 ~ 45800378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAAAGAAAAAGAAACAGACATACAGCGCAAAGATGTTTACAGCTTCGTTAGCGACAGAGTCGTCCATTTTGTTTTAGTTGAGTTGGTCGCTGCATGAATCTCTAGCAAGGACATTATAGGGATTGGAATTTCTGATCACTGAAGAAGTTGCATGAAAAATGAGTGGAATCAATGTGAAGAAGCTCAAAGTCAACGAGCTGAAGGAGGAGCTTCAGCTGCGAGGCCTGGATACTCGTGGGCTGAAGGCGGATCTCGTCATAAGGTTGCAGTCAGCACTTGAGGCCGATGCTGCAGGTGAAGGGGATGGGCCACCGATTGCCGATGTTGGGGAGGAGGGGGATCAGCAAACCGATATTGGCGGAGACGCTGGAGATGGTGGTGACGTTAAAGATGATGGGGAAGAAGAAAAATATATTAAGGACAAGGAAGTACAGTTTGTCCCGCAGGCTGATGAGGCGAATGGTGATAATGAACAGAGTGAAGAAGACAGCCGGGATGGGGCGCAGATGTATGGTCAAGTCCCTGCAATGGGATCTGGGATGGTCGATTTCACAGAAGATGTGATGGAGCCACAGATTCCGCAGGCGTATGAGTCAGACAAAAGACCAGAGCCACAGGTGCTAGAACCGGAGATGGAGGAACCTGTGCAACCAGAACCTGTGCAACCAGAACCTGTGCAACCAGAACCTGTGCAACCAAAGCTTGTGCAAAAAGAGCCACTGGAGTCGGAATCAATTGAGCCTGTGGAGATGCCTGAAATTAAGCCAGAGGAGTTTGTGATGAAAGCAGAGTTGAAAAAGGAGCAGGAGCAGTTGAAGGAAGAGAAGGAGTCCCAGCAGCCAAGGGCTCATCATCCAGAGCCAGCCAATGAATGGGGGGCTGAGCAGGCGACCCAGGCCAAAACGGAGGATAACCGACACAACCGTAAGAGGCCATACGATGAAGGCCGTGGCTATGGATACTATGAACATCGGGAGGAAAAAAGGGGACGTTCTCCCCAGCCTCcagcagaggaagaggaagaagatttTGATGACACTCTTGTGGCCATTGATACTTATAATTGCGATCTGCACTTCAAGGTATCTCGTGACCGGTATAGTGGATACCCGCTGACCATTGAAGGTTTTGCATACCTGTGGTCAGGTGCACGAGCTTCCTATGGCGTCAACAAAGGGCGAGTCTGCTTTGAAATGAAGATAAACGAGGAGATCTCTGTGAAGCACCTTCCCAGCAGTGAGCCTGATCCTCATGTAGTGCGGATTGGCTGGTCTCTGGACACCTGCAACACACAGCTCgGTGAAGAACCGTTCTCTTATGGCTATGGAGGAACTGGCAAGAAATCTTCGAAGTGTAAATTTGAGGATTACGGGGAAAAGTTTGGTGAAAACGATGTCCTTGGGTGCTACATTGACTTCGATAGCGGTGAGGGAGTGGAGATGGCCTTCTCAAAGAACGGCAAGTGGCTAGATGTGGCCTTCCGTGTGTCACGGGAGGAGTTGGCCGAGCGGCCACTCTTTCCCCACGTTCTTGTGAAGAACTGTGCCATTGAATTCAACTTTGGCCAGAAAGAGGAGCCCTTCTTCCCCCTGCCAGAGGGATACACCTTCATTCAGAACGTCCCTCTGGAGAACAGGATGCGGGGGACTGTTGGGCCTGCCTCCAAGGCTGACTGTGAGCTATTGATGATGGTTGGTCTGCCTGCGTCTGGGAAAACCACTTGGGCCTTGAAGCACGCGGAGGAGCACCCTGCAAAGAAATATAACATCCTGGGCACCAACGCCATAATGGAGAAGATGAAGGTGATGGGGCTGCGGCGTCAGAAGAACTATTCAGGTCGGTGGGATGTCCTGATCCAACAGGCCACACAGTGTCTGAACAGGCTGATCCAGATCGCTGCCCGCAAGAAGCGTAACTACATCCTGGATCAGACAAATGTATATGGATCAGCCCAGAGACGAAAAATGCGTCCTTTTGAAGGTTTTCAACGCAAGGCTATTGTAATATGTCCCACGGACGAGGATTTAAAAGAGCGAACGTTAAAGCGAACTGATGAGGAAGGGAAGGATGTGCCCGATCATGCCGTATTAGAAATGAAAGCCAACTTTGTGCTCCCAGAAGCTGGTGAGTTTCTTGACGACGTGACCTTCATCGAGCTGAAACGAGAAGAGGCTGACACGCTGGTAAAGCAATACAACGAGGAGGGCCGCAAGGCCGGCCCACCCCCAGACAAACGCTTCGACAACCGCCAAGGAGGATTCCGTGGTCGTGGTGCACCCTACCAGCGCTATGACAACCGTGGTGGTCCCCAAGGGGCAAGGGGAGGCTATCAGAGTCAAGGTGGCAACTTCAGAGGAGGGTATAACCATGGAGGCTACCAGCAGAACCGCTGGGGGAGCAACCGTGATGGTGCTGCAGGAGGACAACATGGCTACAACCGCAACCAGCAATCTGGAGTGAGCTACAATCAGCACCGCCAAGGACAATATAACAAGGGAGCCACTGGGAGTTACAGCCAAGGACAGCCACAGACATACAACCAGGGATACAATCAGGGCAACTACAACCAGGGTTACAACTACGGCAGCTACAGCCAGTACCCAGGTTACAGCCAAACTCCTGCCGCCTCCGCTGCTCCTGTTGCCACTGGACAGACCTACAACCAGCAGCAACAGACCTACAACCAGCAGTATCAACAGTATGCACAGCAGTGGCAGCAGTATTACCAGAACCAGAGCCAATGGAATCAGTACTACAGCCAATATGGAAACTACAGCCAGGGTTCTCAGGGCACACAGTAGGCATAAAGTAGTGCGCTGACGAGACGGATCTCGTTCCCTCAGCAGCATTCCATTGCTTATCCTGCCTGCAGGCTAGACCTCTGCCTTTTCATTGTCATACATCTCCTTAATGATTAGCCTGCACTTTCTTATAgcttacattttcaaaaatgtttaaGGGTCCAGTTTTTCTTCCCTGCCTTTTTAGATACAGGATTTTTATTCTTGCCACGCCACGACGTTAGCATTATGTTTGCAGTAGGTCCTGCAACACTTTAGTAACACGCAGCTTATTTTTCTTGCCTGTTCTCAATGTTGGCTATTTGAAATGAGCAACAGAGGTGTAGTTTAACATGCAGATGTAGGACAGTTTAGTGTTGCGCAAGTGAATGTTTGTTTATTAGAGCTCATAAAAGGTAGCTGGGATTTGCATGTGTACATTTCAAATGTGTTTTTAAGAGATGGAATATTTTTGGACAACATTGTTTTTGTTTTCAAATTTTGCTATTGACAAGACATTTTTTAGTTTTAGATCAAAGAACCATAAGTTTTAAAGAAACTGGTGGAGTCTGGACTTATTATTCTCGTTTTGATTTAACCATTAATATTTTGCCCATATTTATTGAAATTGAAGACTGACATTTTGATGACTTTTTTTTATAAAAAGAGAGATTGTAAAACCACATTTACCAGCATTTTTCACACCATTTAAAATATTCTGTAACATGTCCCTAAAGTCGTTTTTGAATCTTGTGATCAATAACTAGTTTGTGTGGTTGTAAAACTGTATAGAATGTATGTCAAACAGTATCTGCATATGGTTCTGTGTTCAAACAAAATGTAATCTTTTTGTATTTGAGAATATAATCTGAAGATTTTTACTTCAAAATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017136 lncRNA upstream 2474 45789442 ~ 45789736 (+) True G894072
TU1017135 lncRNA upstream 3212 45788696 ~ 45788998 (+) False G894071
TU1017132 lncRNA upstream 3212 45788704 ~ 45788998 (+) False G894071
TU1017134 lncRNA upstream 3244 45788696 ~ 45788966 (+) False G894071
TU1017152 lncRNA downstream 546 45800924 ~ 45804121 (+) True G894074
TU1017164 lncRNA downstream 72322 45872700 ~ 45872787 (+) True G894084
TU1017166 lncRNA downstream 74832 45875210 ~ 45876191 (+) True G894086
TU1017188 lncRNA downstream 98219 45898597 ~ 45899832 (+) False LOC110534056
TU1017290 lncRNA downstream 187369 45987747 ~ 45988262 (+) True G894163
XM_021618691.2 mRNA upstream 9622 45778283 ~ 45782588 (+) True LOC110534050
XM_036990451.1 mRNA upstream 22048 45759700 ~ 45770162 (+) False LOC110534034
XM_021618671.2 mRNA upstream 22048 45759975 ~ 45770162 (+) True LOC110534034
XM_036990450.1 mRNA upstream 51367 45724817 ~ 45740843 (+) False LOC110534032
XM_021618702.2 mRNA downstream 6307 45806685 ~ 45813020 (+) False LOC110534054
XM_036990463.1 mRNA downstream 6307 45806685 ~ 45813020 (+) False LOC110534054
XM_021618700.2 mRNA downstream 6308 45806686 ~ 45813020 (+) True LOC110534054
XM_036990456.1 mRNA downstream 12796 45813174 ~ 45885942 (+) False LOC110533121
XM_036990457.1 mRNA downstream 12796 45813174 ~ 45885942 (+) False LOC110533121
TU1017032 other upstream 148654 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 199901 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 207576 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 223618 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 781361 45008834 ~ 45010849 (+) True G892499
TU1017187 other downstream 100667 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 315907 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 826914 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1240136 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1341666 47142044 ~ 47151549 (+) False LOC110511048

Expression Profile