RNA id: XM_021618702.2


Basic Information

Item Value
RNA id XM_021618702.2
length 3946
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110534054
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45806685 ~ 45813020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCACACCTACATTACGCCTTATTTGGGCACAGGTGACCGGAAGTATCTAATTTGATGGCGGCGGGATGAAAGGCTCAAAGACGTGCAACAACGTAGGCAACATCATTTTTCTACCTAGCTCTGACGAAATGTCGGTTTTTAATAGTGATGGAGTTTTCAAAAGCCACTACTTTCAACTTATTTAATTTTTAAAGAAGACATCCTAACTGGATCTACCAATGCCAAACTCCATGGACGACCGTCTGCGCGTGGTGGCGGTGATACACGCTTTGAAAGCATCTGGAGTTCGCGTGAAAAACTGGAAGAACTTATTGAATGGGCCATACACGAGCGACCCTGTCAGACAGGCTGGCCTGGAGCAGGGGGAGCCAGTCTTTTCTCTGCCACATTCAGCCACTCTGCAGCCCTGTGATGTGGCGTCTCTTGTGAAGCAGTTCTTACGGGAGTTGCCCTCGCCCCTCATCCCTATGGATCTACAGGTGCCACTGTGTCGTGCACAGGGCTTCGACGAGGAGGAGGGTCGGCAGGAGCAGGGCGAGGATGGAGCTCTTCTTCTCACAGCCCTGTTCCCCCCGTCGCATTCACGGGCCCTCCGATACTTCTGCACCTTCCTGAGACAGACGGCTCAAAGATGTAAAGAGAATCGTATGGAAGTGGGCAATCTGGCTCTTGTGATTGCACCCAATCTGCTACATTGTCCAGCTGGGGGCTCTAAACTGACCGCAGGTACAGAGAGACGACTGCATAGACAAGCAGCAGTGATCAAGAAACTCATAATACATGCTCATCGCATTGGTGTTGTCCCCCCTTCTATTATGGACATGGCAACAGTAGCAGAGTCCTCCACACCCCCAGTTGATGGGGGGAGGTTTCAGGAGAGGGCAGGACTTGGTGTGTATAGACTTTTAGGACATCAAAGGAGGCGCAGTGTTGGAGagatatttgtGGATGCTCTCAGTAAATTGAAGACGGGCCGCACTCACACTGACCTTTTACATCCCCCAGACAGCCAGCAAAATACAAAGACCGCTCACCACAACACACCTGAATCACCAATCACATCTAAACGAAAGTCGACTGAAGATCCTGTCCCTGATGTCGAGAGCTCTGCTAAAAAAAGACGCTCAATCCATGACCTTAGAGAAGAAAACCAATCCATGAGCAAACAACCCTCCAATGATTTCGAGGCGGCAGTCGGCCAAAGCCCTACCCGTAGTCACACTTCTGTCCTGAGTGGAGTGGAGGGCAGTAGGGAGCACGAGCGCTCTGTCACTCTCACTGCCccagagaagaggaggaatcaCAAGAAAGATTATAAAACATCAAACAAGCATCCGGTGCAGGAGGACAAGGCTCATCGAAGGACATCTCTTAGATTCTTCAACATGACAGTCTGGAGCAGCCCTGACCCTTCCCCCACATCCATTGGGAATGACACTGAGAATTGGATCATGGGCAGTATATTGGTCACTGATGGTATGACTGAAGCATCCAGCTCTGAGGTTGGACCATCCAGGATTCCTGTCATAATGACTGATGGTATGACAGGACCATCCAGGATTCCTGTCATAATGACTGATGGTATGACTGGACCATCCAGGATTCCTGTCATAATGACTGATGGTATGACTGAACCATCCAGGATTCCTGTCATAATGACTGATGGTATGACTGAACCATCCAGGATTCCTGTCATAATGACTGAACCATCCAGGATTCCTGTCATAATGACTGATGGTATGACTGAACCATCTAGGATTCCTGTCATAATGACTGAACCATCCAGGATTCCTGTCATAATGACTGATGGCCCAGGGCAAgTTCTAGTGAGGAGTGAAGTGGAGGATGACCCTGATCTGCCAAATTACAGCTTTGCTGAAAATCCCGATCACTTCCTGGATCTCGCGACATTGGCCTCACCTTCCAGGACACAAGCTGGGGAATCATGTGAATGCTCTGGTGTCAAGTTGGAAACCGAGACGATAGTGGAAACCGTTAGACAGTATGAAACAAACCATGTATTGAGGGATCCAGAGCAGGTTGGGATAAAAGAGGACCCTGACGACGTGGGTCTAAGCAAGAAGCAGTCAGAAGTGGATATATCTGTCAGTCAGAAGCCCCGTCACCCTCGTCGCTCCATCAGTATGCCAGAGGTGGCATTGGACCAACTGAGGATTCAAGATGAAATTTACAAGAAAGAGAAAACAGATTGGATGATCGAGAAAGAAGATGGAGTCTCTGGGGACACACTTCAACTGCCGGTGAAGAAAGAGAAGATGACAGAGTCAGGACTGGGTTTTAAGAGGACACACATGTCTGTAGCAGAGCGCATCAGGCGCTTTAACGCTCTGACAACGCTGCTCCGTAACCCCAGGGTTCCTCCAAGGCCCCCTGAACCTCAGCTCAATGATGTCCTGCATGAGAGTCAGCGGGAGGGGGGTCAGCGGAGCGTTGTACGTCTGCGCCGGCAGGGAGCACGGCGGTTTGGACGCTCCATCAGTCATGATGGTGTTCCCGGACCGTGGCCAGGACAAGCCTCTAAAAATCATCAAGAGGTGCCAGTGGTTGTTCAAAGCCTCAGTGAGCCAGTCCTATGTCCACCTCCAGAGCCAACTCCTAGTGCTTATCAATTTGCCCAAGAGGGACAGTTTGAAATCCAACATACTCCTCAACTACAACAGGAACACCTCATGCAGACCATCCAGGATTTGTGCGCTCCTCCGTCACCCAATCCAAAGCAGAACAAGGACTCCTGCCAAGTGACGTTTAAAGAATCACAATTGAATCTCAAAGAAAGACAATTGGAACCGGTGGAGGAACAACCTAAGGAGTCAGAGCTACATGATCTGCTGGAGATGCACTTGAATACATGCAATCCAAAAGAGGAGCAAGACAAACACCTCACAGTTCCAATTCAGGTGAATAGACCGTTTCTGACCGACACGGTCTTAGATGGTCCACCTCAGACCATGGCCCCCCTACAGCAGGAGTCCAAAAGTACAGAAGTCAAATTCCCTCTCCATTTTCCAACgaagccctcctctctctctcaaacagaaACATGCTCTCCCATTCCCAGTGGACCCTCTCCCACACCAATAGACAGAACATCAACTGACCTCTACACTGCACACTTGGTGGCTAACTGCTCCCCTTTCTCTGTCACGACCTTTGGCTTTATAGAGATAGACATGGGGGTCAGTGAGAGTGATGGGGGTTCTCTCCCCGTTGAACTCTCTCCATCACCAGCCTTGCAGTTCAAGCTCCCGGCCACCAAGAGACGCTACAGAGACTCGCCCTGCTGGCCCGTCCATGAGATTAGCATGGCCACAGGGGACCCATTGCAGAtctgaggggtacaggacagacTAAATGGTACTCCGTAACTAGCGCATTGGTCTTGAGTAGTAGGGTTTACAAATGGGAAAATAAGATCACTCGCACAAAGAATGCCAtatgtttttttaatatattttttaaatgtaattttctgTTATGCCAATAGGTTATCCTAGAAAAGTAGTATTTTAAAGCGGCAGTCAACAGTAGAACAATAACAAAGTGGCCTCCCTGTTTCGGTAAAaatctgagggatggggctggagaaatgtaaccactctcaaatgtaTCGACAAAGCTATAGATGCAAGGCCTGCCTGTCCATAATATaacaattatagttttaaccatgtatTGAGACTAAattgtgtttgtttacattgtttttcaaacattggagtaaaataagcttattttgggttctgatggtgtACAAATGTTACTAAGCTGTCAATCAATGGGTAAATATCATTATATCAAGTAAATTATAttatgtagcaactgctgattgcagATTTTATTATTGTGAAGTTGCGTTTTACATATCTGACTATATAATTTGTGTAAGTGTATGTATTTCAGTTTGAATAAAAtgatttattttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017152 lncRNA upstream 2564 45800924 ~ 45804121 (+) True G894074
TU1017144 lncRNA upstream 6311 45792263 ~ 45800374 (+) True LOC110534052
TU1017136 lncRNA upstream 16949 45789442 ~ 45789736 (+) True G894072
TU1017135 lncRNA upstream 17687 45788696 ~ 45788998 (+) False G894071
TU1017132 lncRNA upstream 17687 45788704 ~ 45788998 (+) False G894071
TU1017164 lncRNA downstream 59680 45872700 ~ 45872787 (+) True G894084
TU1017166 lncRNA downstream 62190 45875210 ~ 45876191 (+) True G894086
TU1017188 lncRNA downstream 85577 45898597 ~ 45899832 (+) False LOC110534056
TU1017290 lncRNA downstream 174727 45987747 ~ 45988262 (+) True G894163
TU1017291 lncRNA downstream 175246 45988266 ~ 45989320 (+) True G894164
XM_021618693.2 mRNA upstream 6307 45792208 ~ 45800378 (+) False LOC110534052
XM_021618695.2 mRNA upstream 6307 45792208 ~ 45800378 (+) False LOC110534052
XM_036990453.1 mRNA upstream 6307 45792208 ~ 45800378 (+) False LOC110534052
XM_036990454.1 mRNA upstream 6307 45792208 ~ 45800378 (+) False LOC110534052
XM_021618694.2 mRNA upstream 6307 45792210 ~ 45800378 (+) False LOC110534052
XM_036990456.1 mRNA downstream 154 45813174 ~ 45885942 (+) False LOC110533121
XM_036990457.1 mRNA downstream 154 45813174 ~ 45885942 (+) False LOC110533121
XM_036990458.1 mRNA downstream 154 45813174 ~ 45885942 (+) False LOC110533121
XM_036990459.1 mRNA downstream 154 45813174 ~ 45885942 (+) False LOC110533121
XM_036990460.1 mRNA downstream 154 45813174 ~ 45885942 (+) False LOC110533121
TU1017032 other upstream 163129 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 214376 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 222051 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 238093 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 795836 45008834 ~ 45010849 (+) True G892499
TU1017187 other downstream 88025 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 303265 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 814272 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1227494 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1329024 47142044 ~ 47151549 (+) False LOC110511048

Expression Profile