RNA id: XM_021618704.2


Basic Information

Item Value
RNA id XM_021618704.2
length 2417
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110534056
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45898515 ~ 45901940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGacattattgtttttgttttactgACTATGTTTTGTATAAAGTGATGTATTAAAACGTTAATCAAATGTTCTAGTTTGCTAACTAACTAACAACCATATTTCAGGCCAGCTATGTTGACAAATGTATAATTTGAACCTAGGActacagctagctaacgttagccagatagctaactagctagctaatccCAGCTAGCCACTGACACTGTAAACACATGTTCAATTCAGCGTTATTACGTGCTCTACCTGCAGGCAGAGGAGCTGCACATATACCGGTAATGGCAGAGCTGCACATTGTCGGTCAGATCGTTGGGGCAAGCGGCTTCCCTCAGAGCAGTCTCTTCTGCAAGTGGGGAATTCATACAGGGGGTGCATGGCGACTTCTCTCTGGCTTGAAGGAGGGGcagacccaagtggatttgcctcagACAGGGGACATGGCATACTGGAGTCATCCCATTGATCTGCACTACACCACTAAAGGACTGCAAGGCTGGCCCAAGCTTCACCTGCAGGTTTGGCACCAGGATGCATTTGGGCGCTGTCAGCTGTATGGGTATGGATATTGCCATGTGCCCTCCAGCCCAGGGCACCACCATGTACGCTGTGTGACCTGGAGACCACTGGGATCCTGGCAAGAGCAGATAGCTCAAATCTTTGTGGGTGGAGGTCCCCAGCTGCGCTCCCCGGacatcatatacagtggggcggACAGATATAGGCTGCACACAGTGGCTATGGGCAGTGTAGAGCTGGAGCTAGGCATCATCATGCGACACTTTGACAAATATGGTGTAGAGAGCTGAAATGTTGAGAGATTGGACAGAGCAAAGGGTGAATGGAGAGAGGCCTGAATGGAGCACTGTATTGTTAGTGGGTGTGGATTTTGACCATATCTGCAACGGGTACATAAGACTGAGCAGGTCAGATTAGATATTTTGCCTTGTGAGATGTGTTGATGTTGCATACATTCACTAtagatacaaaagtatgtggacaccaattCAAATTAagggatttggctatttcagccacacccattgctgtcaggtgtataaaatcaagcacactgcTATGCACTCTCCATAGgaaaatattggcagtagaatggccttactgaagagttcagtcACTTTCAACATGGCACGGTCTTAGGATGCCatatttccaacaagtcagtttatcAAATTTCggccctgctagagctgacccggtcaactgtaagtgatgttattgtgaagtggaaacgtctaggagcaataaatgctcagccgtgaagtggtaggcacacaagttcacagaacggggccgccgagtgctgaagcgtgtaccgtgtaaaaatcatctgtcctcggttgcaacactcaataccaagttccaaactgcctctggaagcaacgccagcacaaaaactgtttgtcaggagcttcatgaaatgggtttccatggccaagcagccatacacaagcctaagatcaccatgtgcaatgccaagcgttggctggagtggtgtaaagctcgccgcagttggactctggagcagtggaaacatgttctctggagtgatggatCACGCTTCACATTCTGGCAGTCCAacgaacaaatctgggtttgtCGGATGCTAGAAGAATGCTtcctgccctaatgcatagtgctaactctaaagtttggtggaggaggaataatggtctggggctgtttttcatgggctaggccccttttttccaGTGAGGGGAAaacttaaagctacagcatacaatgacattctagatgattctgtgcttccaactttgtggtaggccttttcctgtttcagcatgacaatgccccatgcacaaagcaaggtccatacagaaatggtttgctgagatcggtgtggaagaacttgactggcctgcacagagccctgacctcagccCCATTGAACACTTTTGGAATGAACTGGAgtaccgactgcgagccaggcctaatcgcccatcatcagtgcctgaccttactaaagctcttgtggctgaatggaagcaagtccctgcagcaatgttccaacatgtagtggaaagccttcccagaagagtggaggctgatatggcagcaaagaggggaccaactccatagtaatggccatgattttggaatgagatgttcgagcaggtgtccacataattttggtcATGTATGTGTATGCTGAGAAGACCCCAACATGCAAATGTGTGTCTTTCCCCTATTTCTCCACAAAGGGGGGGTGTGAGCCTTTCAACACAATCTGCCTTCCTGATTTtaaatttttaaattttttatataACAGGTATTTAAAAATGCAAACCAGATTTTATACTGTACTTAATTTCAGTTTTCTATTTTCCTATGaactttttttttatatagtaAAATTATGTAAATAAATCATTACCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017166 lncRNA upstream 22470 45875210 ~ 45876191 (+) True G894086
TU1017164 lncRNA upstream 25874 45872700 ~ 45872787 (+) True G894084
TU1017152 lncRNA upstream 94540 45800924 ~ 45804121 (+) True G894074
TU1017144 lncRNA upstream 98287 45792263 ~ 45800374 (+) True LOC110534052
TU1017136 lncRNA upstream 108925 45789442 ~ 45789736 (+) True G894072
TU1017290 lncRNA downstream 85807 45987747 ~ 45988262 (+) True G894163
TU1017291 lncRNA downstream 86326 45988266 ~ 45989320 (+) True G894164
TU1017299 lncRNA downstream 97186 45999126 ~ 45999454 (+) True G894172
TU1017252 lncRNA downstream 128205 46030145 ~ 46040261 (+) False LOC110534062
TU1017247 lncRNA downstream 128410 46030350 ~ 46040261 (+) True LOC110534062
XM_036990458.1 mRNA upstream 12719 45813174 ~ 45885942 (+) False LOC110533121
XM_021618706.2 mRNA downstream 1958 45903898 ~ 45910889 (+) True LOC110534057
XM_021618707.2 mRNA downstream 26115 45928055 ~ 45948321 (+) True LOC110534059
XM_021617213.2 mRNA downstream 57552 45959492 ~ 45973263 (+) True LOC110533122
XR_005053678.1 mRNA downstream 71426 45973366 ~ 45974174 (+) True LOC118966786
XM_021617214.2 mRNA downstream 75419 45977359 ~ 45979901 (+) True LOC110533123
TU1017032 other upstream 255105 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 306352 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 314027 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 330069 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 887812 45008834 ~ 45010849 (+) True G892499
TU1017351 other downstream 214345 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 725352 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1138574 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1240104 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 1240104 47142044 ~ 47151549 (+) True LOC110511048

Expression Profile