RNA id: TU1017247


Basic Information

Item Value
RNA id TU1017247
length 2053
lncRNA type sense_over
GC content 0.46
exon number 4
gene id LOC110534062
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46030145 ~ 46041649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGAAACAGACTCTCTAAGATGGCACTGACACATGGACCTGCCACTGTGTTCCTGAACTTTCTGAGGATATTGTCTATGACTGACTCTAAAGCTCTCATCCAGTCAGTGAGAATAGAGATGACTTGGGAGGTCGTCTCCTGTTCATCTCAGAACGTCTATCCTGTCCCTCAGGTGGCATGGACAACAGACCCAGTGTCTGCCCCAGAAACACAAAACTCCACCAGCAAACCCCAGACTCCAAAGGTCTAAACACAGTGGAGAGCGCAGTAAGGATCGTGGGTCATGTATCTGACCACACCTACTTCTGTTCTGTCATCTCTACAGACAAGGCCCAGGTGTGGACAGTCTCTATGAGGCAGCAAGAGAAATTGATTGGACAGTCAAGAGCTGTCCATTCCTTGCATGGCTCCACAGAACCTCCAGAACTTCTCCCTCACATGGACCTTCACCAGGACTAATGAGCCCACAGTCATCCTAAACTACGACAGCAGAACCAGTCGGACTTCCAACCTCTGGGAGGACCGGGCTAGACTGGAGCAGGACCAGGTTCTGATGGGCAACGGATCCCTCCTTCTTCGCAACCCAGAGAATCAGGAACCTACAACTGCATATTCTCAGGCTTTCAGAGCAGATACGTGGTCCAGACCCAGGTCAACATTACAGTTACTCCAATAGTGGAGGATGAGCACAACAGTGAGGTCATTGTGGGGTACAGCAGCCTTTGTAGCCTTCTTTTGGCTTCACAGTTTCTAAAGACACAGAGGTAAGCGACTACAGACCTCTAAAAATAACGTGACACCTGATTGTACTTTCAGCTATCTTTCCAGTGGGATAGCAAATGATGGACAATTGTAAAGACGGGCGACCGTTGCCTCTAATAAAGACCCTCACATGCAGGTAACCGAAGACTAGAGGGTCAGAACAGTAACACGTTTTAAACCGTTCTTGAGGAGGATGACTTGCTGTTCTAAAACGCTGTATTGTTGTGGTGTAGATACAGCAATAATTATGATTGGATCAACTTTACGCCAACAAAATGGAGCAGGTCTGGATGAAATAGGATCCGCTGAACATAGACCACATACACCAACAAAATGGAGCAGGTCTGGATGAAACAGGATCCGCTGAACATAGACCACATACACCAACCAAATGGAGCAGGTCTGGATGAAACAGGATCCGCTGAACATAGACCACATACACCAACAAAATGGAGCAGGTCTGAATGAAACAGGATCCGCTGAACATAGAACACATACACCACCAAAATGGAGCAGGTCGGGATTAAACAGGATCCGCTGAACATAGACCACATACACCAACAAAATGGAGCAGGTCTGGATGAAACAGGATCCGCTGAACATAGACCACATACACCAACAAAATGGAGCAGGTCTGGATGAAACAGGATCCGTTGAACATAGACCACATACACCAACAAAATGGAGCAGGTCTGGATGGAACAGGATCCACTGAACATAGACCACATACACCTACAAAATGGAGCAGCTCTGGATGAAACAGATGCAACAATATCATACACCCAAGAAGGGGATATATCGGGACCATGTACATCAGGAGAGGATGAAGAAGTAGGACTTCGTCACCTCCACACACAAGGAGGTCCCGTCCGACCAAACACCAGAGGAGTCGATTCCTCTGGACCAGATGACTCAAAGAGGTGCACATGTCCAGGACTTAGTAGGAAGTGATGCACCAGGACCTTACATAACATGGGGTGGTCTACCAGAACTAGACAGCATATCATATTGGAATAGCGATTGAGGAGATACAGTACTTCTCACAGTGGTCACAGCTGATGGATACATGACTACATCAATATCCTCACAGAGTCCATGTCTAATGCAGACCAATGTGTCCAGACCCATGAACAAAGCTACTATAGTTGCCTGAGAAAAGTTTGGGATGGGTTGGAATAATGTTGGAAAGTAGCACAAATTCCTTGCCCCGTTTGATATTTGCCTTGAGTTACGGTAACCTACAGACATATTCTGACtaacattttaatacatttattaaaGATATCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017299 lncRNA upstream 30896 45999126 ~ 45999454 (+) True G894172
TU1017291 lncRNA upstream 41030 45988266 ~ 45989320 (+) True G894164
TU1017290 lncRNA upstream 42088 45987747 ~ 45988262 (+) True G894163
TU1017188 lncRNA upstream 130518 45898597 ~ 45899832 (+) False LOC110534056
TU1017166 lncRNA upstream 154159 45875210 ~ 45876191 (+) True G894086
TU1017344 lncRNA downstream 63149 46103410 ~ 46104074 (+) True G894197
TU1017345 lncRNA downstream 64094 46104355 ~ 46104625 (+) True G894198
TU1017238 lncRNA downstream 90680 46130941 ~ 46133731 (+) False G894133
TU1017239 lncRNA downstream 91090 46131351 ~ 46133731 (+) False G894133
TU1017242 lncRNA downstream 91870 46132131 ~ 46133731 (+) True G894133
LOC110533125 mRNA upstream 3459 46026045 ~ 46026891 (+) True LOC110533125
XM_036990468.1 mRNA upstream 8604 46008522 ~ 46021746 (+) False LOC110534061
XM_036990469.1 mRNA upstream 8630 46008205 ~ 46021720 (+) False LOC110534061
XM_021618709.2 mRNA upstream 8630 46008523 ~ 46021720 (+) True LOC110534061
XM_036989353.1 mRNA upstream 44251 45979756 ~ 45986099 (+) True LOC110533124
XM_036990472.1 mRNA downstream 28144 46068405 ~ 46089813 (+) False phldb2a
XM_021618711.2 mRNA downstream 28145 46068406 ~ 46089813 (+) False phldb2a
XM_036990470.1 mRNA downstream 28145 46068406 ~ 46089813 (+) False phldb2a
XM_036990471.1 mRNA downstream 28145 46068406 ~ 46089813 (+) False phldb2a
XM_036990476.1 mRNA downstream 28145 46068406 ~ 46089813 (+) False phldb2a
TU1017187 other upstream 128539 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 386794 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 438041 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 445716 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 461758 45554237 ~ 45568592 (+) False LOC110534033
TU1017351 other downstream 76024 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 587031 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1000253 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1101783 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 1101783 47142044 ~ 47151549 (+) True LOC110511048

Expression Profile