RNA id: XM_036990478.1


Basic Information

Item Value
RNA id XM_036990478.1
length 2927
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC110534064
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46105321 ~ 46127336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGCGCTCCTTACCAAACTGAAAAATaggaggtcaaatcatgacgtcgtGATTTTCAGGTCGGAAAGCCGGAGCTgaagaaagaggcccgagttcccaaattgaaattccgagttggatgaccgttcaaatgtatttttttcagtcggagctcgtttttttccGAGGTCCCAGTTGTTTTAActcactgaagtcggaagtctgaCATTTCCGTGTTCTCAGTTGTTTGAACGCGGCATTAGTCAATTGAAAAGTATGAAGCTTTGACGTCACACCACAATTTTCCCCAGTCGGATTAAAGATGGCGCCGCATCATGTTCTAAAGTGCTGTCAGCGGAGTTTATCTTGGATACCTGTTATTTTCATAAACCTTGTCGTTGGCTGGTCTTATTATGCATACGTCGTTGAACTCTGTATCTTAACAATCCCAAATAATGCAGAAAAAATATCATACCTAGTTGTCTTTCACCTGTTCTTCATTATGTTCATCTGGTCCTACTGGAAGACTATCTGCAGCAGGCCCGCCAACCCCTCTAAAGAGTTTTGTCTGCCCAAAGTGGAGAAAGAGCAGTATGAGAAGGAGGAACATCCAGACACTCAGCAGGAGATCCTGAAGAAGGTGGTGGTAGGATTGCCTGTCTATACACGCACTGGGACAGGAGCCGTCCGGTACTGTGACCGCTGTCTGGTGATCAAACCCGACCGCTGCCACCACTGCTCAACCTGTGACATgTGTGTACTGAAGATGGACCATCACTGTCCATGggtGAATAACTGTGTTGGATTTTCAAACTACAAGTTCTTTGTCTTGTTTCTGGCCTACTCCATGCTGTATTGTGCATTCATCGCCGCTACCGTCCTGCAGTATTTCATCAAATTCTGGACACTTTGCCGATGGAGATCTGTTGGGGATTGTCCTCAGAATCAGCTGCCTGACACTCACGCCAAATTCCACGtgttgtttcttttttttgtggCGGCCATGTTTTTCATCAGCATCCTGTCGCTTTTCAGCTACCATCTCTGGCTTGTGGGAAAGAACAGGACCACCATAGaGGCTTTCAGGGCTCCTGTCTTCAGAAATGGCCCAGACAAGAATGGCTTCTCTCTGGGATTCAGTAGGAACATGGCTGAGGTCTTTGGAGACCAGAAGAAGTACTGGATGTTTCCCATCTACACCAGtcacgGTGATGGTAACAGTTTTGTCACCCGGTTGGTGAACTTAGATCCTGAGCAGATAGCTGTGGGCCTCCAGATCAACGGCAAAAGCTCTGTAGATTGTGCTGCAAGCCCCAAGCATGTCCTTGGCGACACCATCAACCACATTGAGGACCATCAGGATGGCAGCTTCGACAAAACAGATGTAGCCGAGACAGTCACAGTCACCATAGAGAGCGAGTCATAGACAGGTAAGATATGGATGACTCCCGCTGAAGTGTGCGCGTTTCCTACAGAGCTTAGGGATGAAACTGATGACCACCCATGATCTTTGATTACCGAGTTGGCTCAAATCTGCCAAGAGACAACTGAGCCATCAACTGTGATGCCTTACAACCAGCAGAATCTAAACAAAAAACACCCCTTATCACTTGCAGCACCCCTACTACCATGGACAAATGTCAAGTAACAGCTCTTGTATGGACATATTTTCTATTGCCATTCTTACATCCGCCAAACAGCATTCCTGGTATGATGGACACAACCTGGACTGTCATGGACGCTACATCTTACATCAGCCGTCTAAGTCCTCACCAAGCACATACTCTCTGACACTTCATCTTTGTTTTTAACCAAAGCTTTTTTTTGTAACTATGATTAATCTCTGGGACTACTCTGTTATTCAAGCCAAAAAAAGTAGACTCTTTGCACTAGCTTAGATTATTTCAGGAAAAGTGCAGGAAAATAATTGCTTTATACTTATACACCTCAGTCGAATTAGTATTCACTTTCTTTATTGGTAAGTGTTTACTGTTTCCCCAGAAACTCAGTTACTGGCTTTGATTGGGTTAAGCCCAGGGAATACAATGTTCAGGGCCTCAAGACACAACGTCTCAGTTGActgtagtgtgtgtactgtatgcacTTTACATTTGAACCCTGTGGAGGGCGCTAAGCATATCCATTGATTTCAACAGGCCATACAGTCTTACAGTAGGTTTGCATGAAAAAAGGCTTTGTAGGAGGACCCTATGCCAAATCCTTTCCAGCTCAACATCGTAATTTAAAGCTAGAACACTTAGTTTTTGGGATTAGAAATTAAtgatatccattgattcttgaatataACCTATAAATGActcgtgagcttagttcaactgtcatacatACCCCCTAcagatttattttttactatgttTGTAAACAACAAATGTAAATGCACTATAGCTTCAGAAAATGGTTAACTAtcctttttatatttttgacgataagtccttgcatccatagctctgtctataaatttgagtggttacatttctccaggcccatccctcagctttttaccaaaactgAGGCGGGGTAACACTTTgtcattgtttcaactgctgattctAGCTTTTAAATGTGCCTGCAGTTAAGTTGTTCAGatttattatgattttttttctgTTGTATGGAAGGACAAAGGTTAAGTACAGTGCCATAGTAAATGGTTCACCTTAGCATGGTGTAATTACTTTAAAATTTCTGTTTGCAATTTTAAACAGTTGATTTTTGCTAATACACATTTGAAGTGTCACACACATGACCCTAATGACGCAGGGCCAAATCCTAACTCTAGATGCATGTTTTGCAAAATTGTGAtctacagtaccggtcaaaaatttggacacacctactcattccagggtttttctttatttttactattctctacattgtagcacaacagtgaagacatcaaaactataaaataacacatggaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017345 lncRNA upstream 696 46104355 ~ 46104625 (+) True G894198
TU1017344 lncRNA upstream 1247 46103410 ~ 46104074 (+) True G894197
TU1017252 lncRNA upstream 65060 46030145 ~ 46040261 (+) False LOC110534062
TU1017247 lncRNA upstream 65060 46030350 ~ 46040261 (+) True LOC110534062
TU1017299 lncRNA upstream 105867 45999126 ~ 45999454 (+) True G894172
TU1017238 lncRNA downstream 3605 46130941 ~ 46133731 (+) False G894133
TU1017239 lncRNA downstream 4015 46131351 ~ 46133731 (+) False G894133
TU1017242 lncRNA downstream 4795 46132131 ~ 46133731 (+) True G894133
TU1017360 lncRNA downstream 11842 46139178 ~ 46139453 (+) True G894212
TU1017363 lncRNA downstream 20539 46147875 ~ 46148129 (+) True G894215
XM_036990472.1 mRNA upstream 15508 46068405 ~ 46089813 (+) False phldb2a
XM_021618711.2 mRNA upstream 15508 46068406 ~ 46089813 (+) False phldb2a
XM_036990470.1 mRNA upstream 15508 46068406 ~ 46089813 (+) False phldb2a
XM_036990471.1 mRNA upstream 15508 46068406 ~ 46089813 (+) False phldb2a
XM_036990476.1 mRNA upstream 15508 46068406 ~ 46089813 (+) False phldb2a
XM_021618713.2 mRNA downstream 16354 46143690 ~ 46151536 (+) False LOC110534065
XM_036990481.1 mRNA downstream 17370 46144706 ~ 46151537 (+) True LOC110534065
XM_021618714.2 mRNA downstream 24344 46151680 ~ 46162320 (+) False LOC110534066
XM_021618715.2 mRNA downstream 24344 46151680 ~ 46162320 (+) True LOC110534066
XM_021618720.2 mRNA downstream 91036 46218372 ~ 46221645 (+) False LOC110534070
TU1017187 other upstream 203510 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 461765 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 513012 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 520687 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 536729 45554237 ~ 45568592 (+) False LOC110534033
TU1017607 other downstream 499956 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 913178 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1014708 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 1014708 47142044 ~ 47151549 (+) True LOC110511048
TU1019024 other downstream 1075589 47202925 ~ 47204624 (+) False G895652

Expression Profile