RNA id: XM_021618714.2


Basic Information

Item Value
RNA id XM_021618714.2
length 2266
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110534066
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46151680 ~ 46162320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCACGTGGGTCGgaattagacacacacacaccgtacttCCGAATGCATCAATGTAACATGGGGGGCTACTGTCAAAGGAGGGGATATCAGCATGTAACTTGTATTGAGTGTTTATATTTGTCGATGCAAGTAGACAGGGGGTTGTTTGGAAATCGTTCTTATGCCATCAACTGTACTCATATTTATGTGTGTTGACGGTTAGAAAGTGATTACTTGAAGCAATCATGAGGCTGTTCAACTTTCTACTAAAAGATGTAACATCGAAAATAGAATATTATTCGAGGTTCTCTCCCTCGCCGATGTCTATCAAGCAGTTTCTGGACTTTGGCAGGGAGAATGCATGTGAGAAGACCTCCTACGTGTTCCTGCGCAAGGAGCTTGCGGTGCGGGGGGCCAATACCATGAAGGAAATCAACCTGTTACCCAGTGACCTGCGTATCCAGCCGTCCGTCAAACTGGTGCACAGTTGGTACATTCAGAGCTTTGAAGAGCTGCTGGATTATGAACACAGGGGTCCGGAGGACAGCCGCACCTTAAGCGACTTTCTAGACACCCTGGTCAAAATCCGTAATAGGCACAATGAAGTGGTCCCCACCATGGCCCAGGGTGTCATAGAGTACAAGCAGAAGTTTGGCTTTGATCCTTTTATCAGCAGCAACGTTCAGTACTTCCTGGATCGCTTTTACACCAACAGGATATCCTTCCGCATGCTCATCAACCAGCACACACTCCTTTTTGGTGATGACAGAACCACCTCCCATCCCAAACACATAGGAAGTATTGATCCTACCTGCAATGTCCCTGAGGTGGTGAAAGATGCTTATGAGACCGCTAAGATGCTCTGTGAGCAGTACTACTTGGTCGCCCCTGAGCTGAACATAGAAGAGTACAATTCCAAGGCCCCTTCGAAGGCTATCCAGGTGGTTTATGTTCCATCTCACCTGTTCCATATGCTGTTTGAGCTCTTCAAGAATTCGATGCGGGCCACAGTGGAGCTCCATGAGAACAGTAGTGCTGGACTCCCCCAAGTGAAGGCCATGGTGACGCTTGGAAAGGAAGACCTCTCTATCAAGaTCAGTGACAGAGGAGGGGGCGTGCCCCTCAGGAAGATTGACAAGCTCTTTAGCTACATGTACTCCACTGCGCCCACCCCGAGCCTTGAACCAGGAAATGGAACTCAGGCTGCACCACTGGCTGGCTTTGGGTATGGTCTCCCCATTTCTCGACTCTATGCACGTTACTTCCAAGGAGACCTGAACCTCTACTCCATGGAGGGGGTGGGTACAGACGCTGTCATCTATCTGAAGGCTCTGTCCAGCGAGTCCTTTGAGCGTCTCCCCGTCTTCAACAAGTCAGCGTGGAGACATTACCAGACTGGTCCTGAGGCAGATGACTGGAGCAACCCTAGCAGTGACCCACGTGATGCAGCCAAGTACAAGATCAAATAACTCTTGAGTCTGGCCCTCAGGCAATGCTGCATGCCACAGGTCATGTCTAGTCACATGACAGACACATTAAGTTACCTTCCACTCCTACAGTGAAGCACAGAACTAAAGCACAGCACTGACTGAAATATTGTCTCAACGGGTAACATATTTATTTCCATCAGGCAGGTAAAGCCAAAACACAGTTTTAATCCTTTATTTCCTTGTTTGCTGGTATGTTATTATTGACCACAGTTTCCATGGTAGCAGATTGCGATTGGTGACCTCCTCCGTCAGATAGCGTGACTCTGTTATTAGGTTTAATAAGTGTCACGTGGGAGTGACACCACgggaaataatgtactttttcccTTAATGCAAATAATGGCCTAGCGTAACAGTATACTGTGTGAAACAAGAATATTAGTTTATCATTTTATGGCAGTGTGCAATGGTTTTCAATAGATTAACCCAGTGGGCATTTTCCCAGCTTAGAAAAAGGGATTAGGTtagtatgtatgtgtttgtgacaTGAAATGTTACTCGGATGCATGATGATGCAATTTGGTACTGTAAGTTATTAAGAGATTATAATAACTTTGGATGCTTATGAAATTGCATGGAACAATATCTAAATCATTTGAGACATATCTTACTTTAGATTACTTAATTGCATGACAAAAAAATACTCTCAGAAATGATTGTTTTGTATTTAATATTAAAAAGAAAATGTCcgaaatgttttgtttttactGCATATCATAGACAACTGAATGCAAATTTGAGCGTTTCACTAAGTATTTCTAAAGAAAAAATAAAGCCTGGTTGATGCAAAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017363 lncRNA upstream 3551 46147875 ~ 46148129 (+) True G894215
TU1017360 lncRNA upstream 12227 46139178 ~ 46139453 (+) True G894212
TU1017238 lncRNA upstream 17949 46130941 ~ 46133731 (+) False G894133
TU1017239 lncRNA upstream 17949 46131351 ~ 46133731 (+) False G894133
TU1017242 lncRNA upstream 17949 46132131 ~ 46133731 (+) True G894133
TU1017377 lncRNA downstream 18144 46180464 ~ 46180736 (+) True G894228
TU1017397 lncRNA downstream 47141 46209461 ~ 46209884 (+) True G894248
TU1017477 lncRNA downstream 117302 46279622 ~ 46280157 (+) True G894321
TU1017445 lncRNA downstream 141341 46303661 ~ 46304186 (+) True G894289
TU1017450 lncRNA downstream 144282 46306602 ~ 46313915 (+) True G894294
XM_036990481.1 mRNA upstream 143 46144706 ~ 46151537 (+) True LOC110534065
XM_021618713.2 mRNA upstream 144 46143690 ~ 46151536 (+) False LOC110534065
XM_036990478.1 mRNA upstream 24344 46105321 ~ 46127336 (+) False LOC110534064
XM_036990479.1 mRNA upstream 24344 46105327 ~ 46127336 (+) True LOC110534064
XM_036990473.1 mRNA upstream 61867 46068600 ~ 46089813 (+) False phldb2a
XM_021618720.2 mRNA downstream 56052 46218372 ~ 46221645 (+) False LOC110534070
XM_021618721.2 mRNA downstream 56053 46218373 ~ 46221645 (+) True LOC110534070
trnac-gca mRNA downstream 67644 46229964 ~ 46230035 (+) True trnac-gca
XM_021618726.2 mRNA downstream 101274 46263594 ~ 46278368 (+) False lipia
XM_021618727.2 mRNA downstream 101274 46263594 ~ 46278516 (+) True lipia
TU1017351 other upstream 33737 46116285 ~ 46117943 (+) True G894204
TU1017187 other upstream 249869 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 508124 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 559371 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 567046 45569452 ~ 45584634 (+) False LOC110534033
TU1017607 other downstream 464972 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 878194 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 979724 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 979724 47142044 ~ 47151549 (+) True LOC110511048
TU1019024 other downstream 1040605 47202925 ~ 47204624 (+) False G895652

Expression Profile