RNA id: trnac-gca


Basic Information

Item Value
RNA id trnac-gca
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnac-gca
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46229964 ~ 46230035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggtatagctcagtggtagagcatttgactgcagatcaagaggtccccgGTTCAAATCCGGGTGCCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017397 lncRNA upstream 20080 46209461 ~ 46209884 (+) True G894248
TU1017377 lncRNA upstream 49228 46180464 ~ 46180736 (+) True G894228
TU1017363 lncRNA upstream 81835 46147875 ~ 46148129 (+) True G894215
TU1017360 lncRNA upstream 90511 46139178 ~ 46139453 (+) True G894212
TU1017242 lncRNA upstream 96233 46132131 ~ 46133731 (+) True G894133
TU1017477 lncRNA downstream 49587 46279622 ~ 46280157 (+) True G894321
TU1017445 lncRNA downstream 73626 46303661 ~ 46304186 (+) True G894289
TU1017450 lncRNA downstream 76567 46306602 ~ 46313915 (+) True G894294
TU1017465 lncRNA downstream 85364 46315399 ~ 46315876 (+) True G894309
TU1017456 lncRNA downstream 91144 46321179 ~ 46323120 (+) True G894300
XM_021618720.2 mRNA upstream 8319 46218372 ~ 46221645 (+) False LOC110534070
XM_021618721.2 mRNA upstream 8319 46218373 ~ 46221645 (+) True LOC110534070
XM_021618714.2 mRNA upstream 67644 46151680 ~ 46162320 (+) False LOC110534066
XM_021618715.2 mRNA upstream 67644 46151680 ~ 46162320 (+) True LOC110534066
XM_036990481.1 mRNA upstream 78427 46144706 ~ 46151537 (+) True LOC110534065
XM_021618726.2 mRNA downstream 33559 46263594 ~ 46278368 (+) False lipia
XM_021618727.2 mRNA downstream 33559 46263594 ~ 46278516 (+) True lipia
XM_036990489.1 mRNA downstream 144662 46374697 ~ 46382856 (+) False prdx4
XM_021618744.2 mRNA downstream 144687 46374722 ~ 46382856 (+) True prdx4
XM_021618749.2 mRNA downstream 162877 46392912 ~ 46395196 (+) True sat1a.2
TU1017351 other upstream 112021 46116285 ~ 46117943 (+) True G894204
TU1017187 other upstream 328153 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 586408 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 637655 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 645330 45569452 ~ 45584634 (+) False LOC110534033
TU1017607 other downstream 397257 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 810479 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 912009 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 912009 47142044 ~ 47151549 (+) True LOC110511048
TU1019024 other downstream 972890 47202925 ~ 47204624 (+) False G895652