RNA id: XM_021618769.2


Basic Information

Item Value
RNA id XM_021618769.2
length 1521
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110534099
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46611055 ~ 46615697 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCACTGAAAGCTGTTGGGAGTCAGAGAACGGATGCTGAGTACGGATGTTGAGGTTGGTACTGCACTCCTCAAGATGTCCAGTTTTAACAGCATGTGACTCCAGAGTGGGACTAGCGACCAGGAACGGAACGAAGCCTGACCATACATACATTGAAAATTTTCACTCTCTTGGAAGAGCTCGAACTCTGGAAGCCATGGCAAACAGAGGACCCAGTTATGGGCTGAGTAGGGAGGTTCAGGAGAAGATAGACCAGAAGTATACTCTGGACCTGGAGGCCAGACTGGTGGACTGGATCATCTTGCAGGTTGAGGGGGACATAGAACGACCAGAGTCTGGGAGACTAAACTTCCAGAGCTGGCTCAAGGATGGAACAATTCTTTGCAGGCTCATTAACAGCCTCTATCCACCTGGTCAAGAGCCCATAAAGAAGATCCAAGAGACAAAGATGGTCTTCAAGCAGATGGAGAAGATCTCTCAGTTCCTGCAGTCAGCTGAAGCTTATGGGGTGAATTCCGGGGACCTTTTCCAGACCGTGGACCTATGGGAAGGGAAAGATATGGCTGCCgtgcaagggaccttgtcagcaCTTGGCAGTATGGCGCTCACAAAGGATGATGGTCAATATCGTGGTGAACCTGATTGGTTTCATAGGAAAGCTCAGGGAAACCGGCGGGAGTTTTCTGAGGAGCAGTTGCGTCAAGGCCGAAGTCTGATTGGCATGCAGATGGGCGGAAACACGGGGGCATCTCAGTCTGGCATGAGGGGGTACGGCATGCCACGCCAGataatgtaaaaatgtaatttgGCTCCTCTAAATTAATCCAAAGTTGCTCTCTCATTAGCTCAGTGTCAGCGTGAAGTTTCCCTGATGATCTCGCTATAGGGGCCCGAGATGTAACCTTATACTGAAAGTCTCAGAACACTATTACAGGGCATTACAGATGATGTCCTTCAATAAGCCTTTGTAAGAGCTCACAGTGGCTCTTCTTCACTCAGTTACACGGTCTGGTGTGTCATTTCTGTCGGAGTGGATGTTTTTGCATCAGACAGGTGTTCAAGGTTTCTGTCAACACAATTGTGAAATGACAGCAACTGTGCCATTGTCTGAGAACTGTTATTTTGAAAAGTAATTGTAATGATAGTCACGATAGTATTAAGGTGCAATATTCTTTATTCGGGTAATTTACAGCACCAGTAGTCTTATTATTTACTACACTGCGGAATGTGAATGCCATGCACTACGGCCATTTTTCTTTTTATATAACTACCTTCGTTGCATGATTTCTTTATGCACAAAGTTCATGTTCAGTATTGAATGTTAAGTGAAATATTTGTTGAAGTACTTCAATTATATGCCTTTTTTTCTTGTTTAATTTATGTTACTTAATGTATCCAGATGTATGAGTTCTGTGTGAAATGACTAATAAAAAGCATGAGTTGGCGCAAAAAGTTGGTAGAAGTGCTGCCTAATGACGAGTTCACTCTAGgctataaatataaataaaattgcACACTATA

Function

GO:

id name namespace
GO:0007517 muscle organ development biological_process

KEGG:

id description
K20526 TAGLN; transgelin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017632 lncRNA upstream 6579 46604263 ~ 46604476 (+) True G894457
TU1017603 lncRNA upstream 27172 46583516 ~ 46583883 (+) True G894436
TU1017602 lncRNA upstream 28411 46582428 ~ 46582644 (+) True G894435
TU1017574 lncRNA upstream 70300 46540545 ~ 46540755 (+) True G894407
TU1017571 lncRNA upstream 74461 46536392 ~ 46536594 (+) True G894404
TU1017618 lncRNA downstream 6394 46622091 ~ 46622954 (+) True G894444
TU1017606 lncRNA downstream 11595 46627292 ~ 46631795 (+) False G894437
TU1017643 lncRNA downstream 17600 46633297 ~ 46638275 (+) False G894468
TU1017645 lncRNA downstream 17600 46633297 ~ 46638275 (+) True G894468
TU1017613 lncRNA downstream 77322 46693019 ~ 46695165 (+) True G894440
XR_005034356.1 mRNA upstream 1416 46608456 ~ 46609639 (+) True LOC110534926
XM_021618768.2 mRNA upstream 15287 46584495 ~ 46595768 (+) True LOC110534098
XM_021618767.2 mRNA upstream 42771 46566787 ~ 46568284 (+) True gsx1
XM_036990501.1 mRNA upstream 92969 46509755 ~ 46518086 (+) False LOC110534094
XM_036990503.1 mRNA upstream 92969 46511002 ~ 46518086 (+) True LOC110534094
XM_021618775.2 mRNA downstream 106068 46721765 ~ 46730727 (+) False LOC110534104
XM_036990510.1 mRNA downstream 106074 46721771 ~ 46730727 (+) True LOC110534104
XM_021618777.2 mRNA downstream 117179 46732876 ~ 46747726 (+) False LOC110534106
XM_021618778.2 mRNA downstream 117179 46732876 ~ 46747726 (+) False LOC110534106
XM_021618779.2 mRNA downstream 117179 46732876 ~ 46747726 (+) True LOC110534106
TU1017351 other upstream 493112 46116285 ~ 46117943 (+) True G894204
TU1017187 other upstream 709244 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 967499 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 1018746 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 1026421 45569452 ~ 45584634 (+) False LOC110534033
TU1017607 other downstream 11595 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 424817 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 526347 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 526347 47142044 ~ 47151549 (+) True LOC110511048
TU1019024 other downstream 587228 47202925 ~ 47204624 (+) False G895652

Expression Profile