RNA id: XM_021618780.2


Basic Information

Item Value
RNA id XM_021618780.2
length 4992
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110534107
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46765048 ~ 46799754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGAAAAGGCGTGCCTGTCCAAAATATTCAACGTATAGTTAAAAAATGGGAGGGCGCACTTGAACTCGTTGAAGTCCTTTATGAAGGTAGGCTGCAGCGTGTGTTTATTGATGAGATGAAAGAAGATGGAAGTGAGAAATGAAATAAAGTAAGGGAAAATATTAAACAATTCGAAGCCTTGCCGGGGAAAAACCGGGGAAGCTGTGAATCGCTGTCGCCATTGGAAAAAAAGCTTAGGAGAGCAGCGATACGTCTGGATTGGCTCACGAAGACACTGCCAGGACATCAAATGTGATCTGTGATGTCATTGCAAGGTGGGGAGGTTTTGGAGGTGTCCAGTTTAAATTGAAAGGGCGGTATTGCAGAGACCACTGTGGCAGATCGACCTGTGATAGAGGCAAGCAGAGAGGACGGAAGGTATTGCCTAGCACTGGTCTTCTCTCAGCCACCTCCACCAGGAACCTGTAGCAGTGTGTCCCGTGCCTCATCACCAGCCTCACACACATCTTCCCAACCAAGCGTCATCTGACTGTGTGACATCAGTTGCAAGGGGATGACCGAGCGCATTCATAACATCAATCTCCACAACTTCAGCAATTCTGTACTTGAGACCCTCAATGAGCAGCGCAACCGCGGGCACTTCTGTGACGTGACTGTTCGGATCCATGGAAGCATGCTGCGAGCCCACCGCTGCGTGCTGGCCGCTGGGAGCCCCTTCTTCCAGGACAAGCTGCTCCTGGGCTACAGTGACATTGAGGTCCCCTCGGTGGTCTCGGTGCAGTCCATCCAGAAGCTGATAGACTTCATGTACAGCGGGGTCCTGCGGGTTTCCCAATCGGAAGCTCTCCAGATCCTCACTGCTGCCAGCATCCTGCAGATCAAAACGGTCATCGATGAGTGCACCCGCATCGTGTCCCAGAATGTGGGCCTGGCCGGGCCAGGGGGGTTCCCTGTCAACCCAGGAGACTCTGGGCAGGAGACGCCCCGGGGCACACCTGAGTCAGGCACCTCTGGGCCCAGCAGCGATGCAGAGTCAGTGTACATGCAGGCCACGTCCCAGCAGAACCTAGAGCGTGCGTACACATCGCATTACTCCTACTCCGGCCTTTCACTGCAGAATGGAACCCGTGAGCGCTCCCACTACGTAACCAGTATGACAACAAGCTACGACCCAGCCCTCGGCACGCAGAAGGACCAGCATGACCAGGACCCGCCGTGGATCACCCGCATCCACGAGAGGTCACAGCAGATGGAACGCTTCCTATCCACCCCTGAGACCACCCACTGCCGCAAGCAGCCCCGACCGGTACGCATACAGACAGGAGGCGTTCACATAAAGCAGGAGGCAGAGGACGAgtacagcagctatggtatggatgaGTGCACAGAAGACACAGAACACGTTGAGGGTGTGGAGAGTGAGCCGAAGGGTGAAAGCTTTGACTCAGGGGTAAGCTCCTCCATCGGTACTGAGCCAGACTCCGTGGATCAGCAGCAGTACCTGCTTGGCTTTGGGAGGGAAGGGGTTGGAGAGGGGCAACAGTGCGAGGGGACCCCAGTGCAGATCGATGTCAATGACTCCTCCCCAGAGCAGATGCATGAGACGGAGGACAGGGGCACATCCCACGGCACTAGCGACAGTAACATGTTGCAGCCCCTGCCCAACCCAATCATGGCCCAGTCCCTGCCAAGTGCCCCACTCTATATGCGTCAGGCCGAATCTCACACCAGCAACCTGAGGATGCCGCTCACCATGACCAGCAACACCCAGGTAATGGGCACGGCCAGCAACTCCTACCTGCCCAACCTCTTTGCCACACAGTCGGCCAGCAACAACAAGCCCTTCCTCTTCAGCCTGCCACAGTCCATGGGAGGCCAACAGACCCAGTTTGTGGCCGTGCCGCCCCCTTGTATGCCCCCATTCTCTCAGCAGTTGATGGTACAGCAGCAGGCAGCGCGGGAACAGCAACAGGCGGCCCAGATGGGACAGGGGGAGAAGAAGCCCTATGAGTGCACTCTATGCACTAAAACCTTTACTGCTAAACAGAACTATGTCAAACACATGTTTGTGCACACTGGTGAGAAACCACATCAGTGCAGCATCTGCTGGCGCTCGTTCTCCCTGAAGGATTACCTAATCAAACACATGGTCACACACACAGGGGTGCGTGCCTACCAGTGCAGCATCTGCAACAAACGCTTCACCCAAAAGAGCTCCCTCAACGTCCACATGCGGCTGCACCGTGGAGAGAAGTCCTACGAGTGCTACATCTGCAAGAAGAAGTTCTCGCACAAGACCCTGCTGGAGAGACACATGGCTCTGCACAGCACAGCGGGCGCCGTCACAGGGCTGTCGGGGGCAGCAGGCGCCGGTGGTCCCGTCTCCATTCCCATGGCCGTGCCCGAACCCGGCGCCGGAGTGGTGGCCCTCGCCGTGCCCGTCAGCGGAGGCGCCGGAATAGGGGGTGGGGTCGGAACAGGAGTGGGTGTGGCTGCGGAGGCAAGCTGCCAAGAAGGGACCACCTACGTGTGCTCCGTCTGTCCTGCCAAGTTCGACCAAATTGAGCACTTCAATGACCACATGCGAATGCATGTCTCCGATGGATAAGTACAAATAGATgcacttctttaaaaaaaagaatgaaaAAGAAAAATGGCactagatttttttattttgggGCATGAAGAGTAATGAGTATAGACACTGGCACATTAAGTTTCCCAGAAaggagttttttttgttgttattctaaAAGAAAAACAAGATGGTGGCCTTAAGGCTTTGTAGTTTGATATTGATCCACTGGATGGATCCTTACTACAGGCCTCTAAATGTATGCTTTCCTAAAATTACTGATTTATGTGTTGAACACTACCGAAAGGCCTacgaaagaaacacacacatacacaaattcAAACTTACacacctatatacagtatagatatATGTTTGTATGAGTGtatgtgttcatgtgtgtatgtgtgtgcttgtgtatttgtatgtgtgcgtgactgcttgtgtgtgtgtgcgcgtgtgcaaaCATTGCCATGGAATTTCTAACATGGTAAATGTGATCCCATATTGACCGTTTTGGGCACTATAGGCGTCCAAGCTTACTGTGGTATGATTttcaaataaacaaaaaaaaaatatctggcTTGGGCTAAAGATTCCCTCTTAAAAAATATTGTTGGTCACAAGTTTGCCTTCTTATGTCGGATAAGAAAAGGAGAGTAATTCATTTGACACtgggtttttatttattattatggtATCGAGGGATTAAAATGCAGCTGTTGTGGAGGTACAAGTTGATTTGACTAATTGTACTGAAATGTAACTTCCTGTGAGTGGGTATAGGAATGGTTATTTGGTTAATGTTTTACTGTCCATGCAGTTTGATGGTTCAGGTTAAGTTGACGAAATTAGGGTTGTTGATAAGACAGTATTTgagcaacaaacaaacaaaaagtaaTATTGTTAGGAGTTTATTTCGTTTGCATACACTGCCACTAATATCTTAGGAGACTGTTAAGGCTATAACTTATTAACAGAAGACAGAAGAAAGTTCTTCTTGACCTAATCTGTTGCTAAAGGATTGTTTAGTTCTATGAAGAGGATTTGACATGTGCAGTTGTGGCAGGCTTGAGTATGTCACCAGACTTATCATGATTGCTGCTCCCACAACGTGTACCAGACTGTTATCAGCTGTAGATTACAACGCGATTCGTCATTATTACTATTATCGTTCAAAtgattcaaaaaaatatatatatatattatttgatAATGGAATGATTTACCAAGAAAGTTTAAAGACAGCCGTCAGATGGATTACCGGTGAATTGAGAATGATTCTGTGAACTTGCATTGGACAGAAATATCATCCTATGACCTAACACTCTTGTCTACCCTGTTCCTAAGGATATGACCCAGCTATTTGAGCAGGTGGAGAAAATGAAATGCACTACTCCTGAAATCTTAGCTCCACCTGGTGGCCCAAATGGCATGTCTAGTCCGGACATGACATGCAGACAAGAGAGACACGAGGCAAAATAAAGCACGATAACATATACCCGGGGTCAATAATTAGCCTACTTCATAATATACCACAATTTGCAGATGGACTTTCCAGACAATAAGATACATTCCTGTTTTCACCGGATACCTAGACACAAGTGTGTACAGAATAGATTTGGGAGTAGGGAGCGGGGATACCGTTCAAGTGTCACGTCACTCAAAGGCTCTGCTCTGATATTTGTCTTGTTGTTCTTGCATTTTATCCAAAATAAGACAGACACGTCTGCCTGCAACTGCAATCTGACGTTTTTGCTCATTTCTTTGAGTAGACACTTTTTTTTATAGTTACAACGATGAGATCGTAACTAACCACAATTACAGTACAGTCTGAaaacaatatgttgtagataaaAACAAAGTGCTGCATTGCAAATTTTCTTCAAATGCCTGTGCTAAATATTGAATTGTTTTACTTAAGTAAATTAAATTCtatgattttcgttttttttttttcattttctaaaggaaaaaaaaaaaaaattcttaaAAGCTTGATAAGAGGACTGCATTATTTTCTTGCATATATGTTGCACTGCTTAAACCGATAAGTGCACTACTGTTACCAGAGATATTTTAGTTTTAGAGAATAATAATCATTTTTTATCGAATGTTTGGTTGTAGAATTCACGTGTTAGAATAGCTTTTGTTCTATTTTTCGATAAGGTAATTCAACGTTTATTGGCTTTTGTTATTGCTTGCTACTATATGTATTGACTTGTGCTGTGTTTGTGCaagcatttattttttattcaaatCCGAACCATCGTGTGAGCTTCTCTCTGTTTTTACCCTTTTTAATGTATGTTTTTCAGGAGTTAATCCCTTCTAACAGCAGTTATCGCACTGCATACATTAGAACAGATGCTGAATTTTCATACAAAAAGCATTCATGCCAAatgatacacccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017613 lncRNA upstream 69899 46693019 ~ 46695165 (+) True G894440
TU1017643 lncRNA upstream 126789 46633297 ~ 46638275 (+) False G894468
TU1017645 lncRNA upstream 126789 46633297 ~ 46638275 (+) True G894468
TU1017606 lncRNA upstream 133269 46627292 ~ 46631795 (+) False G894437
TU1017618 lncRNA upstream 142110 46622091 ~ 46622954 (+) True G894444
TU1017691 lncRNA downstream 147 46799901 ~ 46810823 (+) False G894512
TU1017690 lncRNA downstream 8981 46808735 ~ 46841538 (+) True G894512
TU1017738 lncRNA downstream 73835 46873589 ~ 46874000 (+) True G894558
TU1017741 lncRNA downstream 81492 46881246 ~ 46881537 (+) True G894561
TU1017697 lncRNA downstream 96116 46895870 ~ 46896819 (+) True G894518
XM_021618777.2 mRNA upstream 17338 46732876 ~ 46747726 (+) False LOC110534106
XM_021618778.2 mRNA upstream 17338 46732876 ~ 46747726 (+) False LOC110534106
XM_021618779.2 mRNA upstream 17338 46732876 ~ 46747726 (+) True LOC110534106
XM_021618775.2 mRNA upstream 34337 46721765 ~ 46730727 (+) False LOC110534104
XR_002475084.2 mRNA downstream 64293 46864047 ~ 46867604 (+) True LOC110534109
XM_036990512.1 mRNA downstream 88246 46888000 ~ 46894991 (+) True LOC110534110
XM_021618784.2 mRNA downstream 116382 46916136 ~ 46962543 (+) True LOC110534111
XM_021618788.2 mRNA downstream 209595 47009349 ~ 47016212 (+) True LOC110534113
XM_036990514.1 mRNA downstream 231675 47031429 ~ 47034505 (+) True LOC110533128
TU1017607 other upstream 64524 46627292 ~ 46700540 (+) True G894437
TU1017351 other upstream 647121 46116285 ~ 46117943 (+) True G894204
TU1017187 other upstream 863253 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 1121508 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 1172755 45590359 ~ 45592309 (+) True LOC110534033
TU1018880 other downstream 240760 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 342290 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 342290 47142044 ~ 47151549 (+) True LOC110511048
TU1019024 other downstream 403171 47202925 ~ 47204624 (+) False G895652
TU1019023 other downstream 403492 47203246 ~ 47204624 (+) False G895652

Expression Profile