RNA id: XM_036990514.1


Basic Information

Item Value
RNA id XM_036990514.1
length 608
RNA type mRNA
GC content 0.63
exon number 4
gene id LOC110533128
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47031429 ~ 47034505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATCATTGAGGATAAGGGTGATGAGAATGCAGAGGCTCTGGATGCGGCTGCAGTGGAGGCCGCTCTGTCCCTGTGTGAGGAGACGCCCTGTCTGGCCCCCCCTGGAAGCCCGGGCCCTTCAAGCCTCCTGAGTCTAACCCTGCCACCCCCACACAGGCCCCACAagcctcctcctactcctcccccctccacggCAGTCTGGAGGTGAAGAGGGAGAGCCTGGAGATACGGGGTGGGGCCTCTGCATGTGACAGCCAGAACAGCTGTACCTCAGGGTACACACACCCCCTGGGCATCAGTGGCCTTCCTCCCTCCTGCTCGTCTATGATGCTGGAGCACAGCCAGCCTATTGGCGCTCGTCTGCAGCATGGGGTCATGGGCGGGGCCGATGGGGAGGAAAGCCCTGTCTCTCCCCATGCCACCATCAAGTGTGAGAGTGAAGAGTGGACGCAGCAAGGAGCTGACACACCACACGCAGACTCTGAGGGTGGCCCCATGACAAGAGGACACTCCAAGgaggaagaggagaggggtagcGACGGAGAGGAGTGCCTCAGAGACTAAAGAGGGCccggatggggggggggggggtgaagaggcCTACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1018854 lncRNA upstream 39986 46991163 ~ 46991443 (+) True G895492
TU1018853 lncRNA upstream 40885 46990102 ~ 46990544 (+) True G895491
TU1018849 lncRNA upstream 46069 46985044 ~ 46985360 (+) True G895487
TU1018835 lncRNA upstream 59622 46971453 ~ 46971807 (+) True G895475
TU1017776 lncRNA upstream 79963 46950976 ~ 46951466 (+) True G894596
TU1018882 lncRNA downstream 9489 47043994 ~ 47044294 (+) True G895517
TU1018881 lncRNA downstream 10351 47044856 ~ 47045118 (+) True G895516
TU1018887 lncRNA downstream 20511 47055016 ~ 47055580 (+) True G895522
TU1018892 lncRNA downstream 21611 47056116 ~ 47056523 (+) True G895527
TU1018987 lncRNA downstream 88022 47122527 ~ 47122815 (+) True G895617
XM_021618788.2 mRNA upstream 15217 47009349 ~ 47016212 (+) True LOC110534113
XM_021618784.2 mRNA upstream 68886 46916136 ~ 46962543 (+) True LOC110534111
XM_036990512.1 mRNA upstream 136438 46888000 ~ 46894991 (+) True LOC110534110
XR_002475084.2 mRNA upstream 163825 46864047 ~ 46867604 (+) True LOC110534109
XM_036990511.1 mRNA upstream 231675 46765048 ~ 46799754 (+) False LOC110534107
XM_021618795.2 mRNA downstream 89364 47123869 ~ 47127973 (+) False LOC110534117
XM_036990517.1 mRNA downstream 89811 47124316 ~ 47127973 (+) True LOC110534117
XM_036990522.1 mRNA downstream 97630 47132135 ~ 47151344 (+) False LOC110511048
XM_036990523.1 mRNA downstream 97661 47132166 ~ 47151344 (+) False LOC110511048
XM_036990518.1 mRNA downstream 97666 47132171 ~ 47151344 (+) False LOC110511048
TU1017607 other upstream 330889 46627292 ~ 46700540 (+) True G894437
TU1017351 other upstream 913486 46116285 ~ 46117943 (+) True G894204
TU1017187 other upstream 1129618 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 1387873 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 1439120 45590359 ~ 45592309 (+) True LOC110534033
TU1018880 other downstream 6009 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 107539 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 107539 47142044 ~ 47151549 (+) True LOC110511048
TU1019024 other downstream 168420 47202925 ~ 47204624 (+) False G895652
TU1019023 other downstream 168741 47203246 ~ 47204624 (+) False G895652

Expression Profile