RNA id: XM_036990519.1


Basic Information

Item Value
RNA id XM_036990519.1
length 2647
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110511048
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47132135 ~ 47151549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCAAATATGCAGATAcataggagggagggggggatcaTACTTTGTTGAAGTCCGCTGAAAGTTGGGGATGTCATCTTCCTAACGATCAAGTTAACTGGGAGAATGGGAGAATGGTTCTTCTCAAACGTGCTGGTGCAGACCATACGCTGGCACCGCAGAGACCGGGGTTTCAGATCATTGAGTCCAGACAAAAGTTTTGTAGGTTGCCAGTGAAAGGATGCGGATGAGGGCTGAGGTTTAGAGCGAGAGCCAGGGCTCTAGGGCCTGCCTGTGATTGGCTGGCCGATTCGTCCACAGCGGGGAGGTGCCACCTCACCTGGGCTCAGAGCAGACTGTGAGAACCTATCGGCTCCCCCTCCTCTGCTCGCCCCCTGTCCCCCCTCCCGCCCCCCCCAGCCCTGCACGCACTGGACCATGTCTAGCGGACGGTCGGAGGGAAGCCGAGACCGGACAGCCGAGGCCCTGGAGCGGAACAGCTGCACGGAGGATGTCCCTGTCGTCGAGCGCAGGAACCGCAGTGGCATCATCAGTGAGCCCCTGAGTAAGAGCCTTAAGAGGTCCCGCACCCTCTCCCAGTACACAGCCGCCTGCCCCACCAACACTAATGGACACGCACACCACAACGGAGAGGCCAAGAGCCACCCGGCCAAGCCCCAGCCGCCCCCACAGCCCCAGCCCACCGTCTCAGCGCTGGCGGCAGCCAAGCTGGACCGGACCCTGGAGCAGGTCTTGGAGGGACAGAACGGCCTGCTGCACTTTGCCCAGGCGGCGGAGCTGCTAAAGAGGGCTGGGATGGAGCACATGCTGCTGCCgggggggatggggatggggatgggggggtAGCGATTCAGGCTCAGGGGCAAGCGACTTGGAGGGTGCGTCTGCTGTGGACTCTGTTGGCGGTGTTGCGGACTTCCCGTACGGTGTTGGAGGCGGCTTCCCGTTCAACCCGGGGCTGTTCATCATGACACCGGCAGGAGTGTTCTTGGCCGACAGCGCGCTGCACATGGCCGGCCTGGCCGAGTACCCGGCGCAGAGCGAGCTGGCCTCGGCCATCAACTCCGGCAAAAAGAAGCGGAAACGCTGCGGCATGTGCCCGCCCTGCCGCCGGCGGATTAACTGCGAGACGTGCAGCAGCTGCCGGAACCGCAAAACGGGCCACCAGATCTGCAAGTTCCGCAAATGTGAGGAGCTGAAAAAGAAACCGTCTGCCGCTCTGGAGGTGATGCTTCCTACAGGAGCAGCATTCCGATGGTTCCAGTAAGACTCTGACCCTCCTCCACCCTTACCCCCTTACCCCCTTACCTACCCAAACCCAAAGCTCTGCGATCAAGTGCAATGCCAACTCTCGCTTGGATTGTCTCGGCAGGGACACTGGCTGACAagcaaacaaacaacaaaaatatacaaaAGAACTCAACAGAAATGATACAAAAAAATAATCAATTGAGTAATGGATGCACCTGCTTATTCCTTGAACCAAAAATTGAACATAAAGAAAAATATCTATGGCAACTTTCATTCCCTTTTCTATGTTTCCATTTTGGTACCTTTTGTCCTTTTTCCAGCAGGTTTTTTCTGTCTCTCAGACATGGAACTGTTCGTTGCCAAACAGAAATGACGGACTGAGTGTGGACAATCAACTCATTTGTGTGTTTGGTGTTAATGTTGTTCACGTGTGGAAAGATACAGTACTTGTGTAGAGAATGTACATTTACGGCTATATTTTCAAACTAGTGGCTAACGGCAGGCACTATTGTAATTTTAGCTCCATTGTTCTTAAACTTAAAGCCTTGTCTATTTGatgattttgttttttgttttacaaATATTGTTTTGGAAAACGGATCGCTGGTTGTCTTGTAAAAGAACAAGGAGATatttcaaaatgtaaaaatacTTATCGAAATGAAATAGCAACTGTTATCCCATCAGGCAGAAGTCCAGAGAACTGGAATCTCCCCAACcaacaaaccaaccaaccaacaaagcaaccaaccaaccaaccaaccaacaaagcaaccaaccaaccaaccaacaaacCAACCATCCAACCAACCGTGTTTTCCACGCCTGTATTTCCAAGCTTTTTATTTTGTGAAACTGGCAGCCTTTACGTTCCTGTGGCCCAAACTAGTGTGTGTCATGAGGATTCCCAACGCAGAGGGCGACAGCACTAGGAGACAGCACTTCCATTTGGAATAGCACAGAGGGTGACAGCACTAGGAGACAGCACTTCCATTTGGAATAGCTTAGCTCTGGGTCTACCCATTTGAACGCACTGAAAAAagatttctttgttttttttttctttgtttttttttggaTTATGTTGCTGGTAGCTACATCTTTTAAAACAACAGCGATGTTTGTATTCATTTAGAAAATTGGACTGGTTTTGTGAATAAAAACGAATGCATGTATTTTGTGTCAAAATTTACAGTTCTGATGTTTGTTTACTTGTctttgcatgtttttttttctaaaaCAATGACGGAATTTAGAAAATTCTGAAGTATGAAAATGTCCAGTAATATTAAACATTTGTTCCATTTTCATATCATTggatataataataaaaaatggatGGGGTGGGAAATACAACTCATTAAAGCAGAATCAGGAAATGGTGAGTTTCACCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1018991 lncRNA upstream 2228 47130021 ~ 47130240 (+) True G895621
TU1018987 lncRNA upstream 9653 47122527 ~ 47122815 (+) True G895617
TU1018892 lncRNA upstream 75945 47056116 ~ 47056523 (+) True G895527
TU1018887 lncRNA upstream 76888 47055016 ~ 47055580 (+) True G895522
TU1018881 lncRNA upstream 87350 47044856 ~ 47045118 (+) True G895516
TU1019003 lncRNA downstream 2314 47153658 ~ 47153895 (+) True G895632
TU1019018 lncRNA downstream 39362 47190706 ~ 47190938 (+) True G895647
TU1019028 lncRNA downstream 59667 47211011 ~ 47211229 (+) True G895655
TU1019029 lncRNA downstream 60904 47212248 ~ 47212448 (+) True G895656
TU1019033 lncRNA downstream 66539 47217883 ~ 47218117 (+) True G895660
XM_021618795.2 mRNA upstream 4495 47123869 ~ 47127973 (+) False LOC110534117
XM_036990517.1 mRNA upstream 4495 47124316 ~ 47127973 (+) True LOC110534117
XM_036990514.1 mRNA upstream 97963 47031429 ~ 47034505 (+) True LOC110533128
XM_021618788.2 mRNA upstream 116256 47009349 ~ 47016212 (+) True LOC110534113
XM_021618784.2 mRNA upstream 169925 46916136 ~ 46962543 (+) True LOC110534111
XM_021618798.2 mRNA downstream 107897 47259241 ~ 47374572 (+) False LOC110534120
XM_021618799.2 mRNA downstream 107898 47259242 ~ 47374572 (+) False LOC110534120
XM_021618800.2 mRNA downstream 159564 47310908 ~ 47374572 (+) True LOC110534120
LOC110533129 mRNA downstream 258043 47409387 ~ 47420005 (+) True LOC110533129
XR_005034163.1 mRNA downstream 269483 47420827 ~ 47426481 (+) False LOC118936698
TU1018880 other upstream 89685 47040514 ~ 47042783 (+) True G895515
TU1017607 other upstream 431928 46627292 ~ 46700540 (+) True G894437
TU1017351 other upstream 1014525 46116285 ~ 46117943 (+) True G894204
TU1017187 other upstream 1230657 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 1488912 45622257 ~ 45643556 (+) False LOC110534042
TU1019024 other downstream 51581 47202925 ~ 47204624 (+) False G895652
TU1019023 other downstream 51902 47203246 ~ 47204624 (+) False G895652
TU1019025 other downstream 51902 47203246 ~ 47204842 (+) True G895652
TU1019031 other downstream 65063 47216407 ~ 47217071 (+) True G895658
TU1019490 other downstream 758372 47909716 ~ 47910975 (+) True G896043

Expression Profile