RNA id: XM_021618798.2


Basic Information

Item Value
RNA id XM_021618798.2
length 6036
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110534120
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47259241 ~ 47374572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAAGGGCATGACTTCATAATGGAATGAGACGCAAAACTCATTCAAAACAGTATGTTTAAGAATCTGAGGCTTTGAATCGCGCTTTCACTGCGTTAGTCATCGCAGACGAAACCTCTTTCTATCTGCTGAACTGACTGCAGCTGCTTTTTCAAGCGATCTTTTATATCTTTTTTTCTTCTGAGGGATAGGCCTATGCCCACTGTAATACGCAATTTGAAAACGGGACGCGTGATGCATTTTTCTGTTTTATTTCATTATTAAATTTGAACGTGAAACCGTTTGGTGATGGGGAAGAGCATGAAGTGATTGTCATTTTGTCGGCGTTTGGGGGAGTGTGGTGACCGAGCTTTGGTGTCGGGGTAGGCTATATCATAGCGCTCCAATCTTAAATATCCTTTTTGTGGTGGAGCCCTTAGCAATCGACATATTTCTCTCCGTCTCTGGTAAGTGGgggaggcggagagagacagggcagtGGGAAAAGGCGGTTTATTACCCGTGGAACAAAACACTGTTTCGTTAGGGGCATGAATCGTATGCATTTTTTTGCATGTGGACTATAAAACGAATTGTTCACTGCAGCATTTGGCGTATTTTCTCTGCGGCGAATGATAAAGAAAACCATCAGTGCTGAGCACGGCGCCCACCCGACCACTGCAATTTTTGGGCAAAGATAGACTGGCGTCGTCTTGCGGATAGGCTACTATGGCAGCATAGGAGCATCTTCTGATGGGGAGAATCCATGAATCCCTTGCATTTTAGAATGTGTTTTTAGCAGAATGCAGTGATGGGATTTTAAACCCAGCCTCATTACGCGGTTTCCGGTTCCTAGCTGGTATTTCCACATTGCAAAATTATTGGAAAAAACAGCGGATCCCGATGGCATGGACACTTACGCAAGGTCTGCCGCGCCGCCGTGCTACTGGAGCCTATTTGCTGTCTCTTCCTTCCACCCAGCTCCACCGCCATCGCCCCGCAGCCCAGAGAGCCCTGCCGCAACGCGATCAGCCACCACCGAGCCAAAGCAGGCGGCATGAGGCTTGATTCAGTACATTTATCCATGCTGGTCATCGGGGTCTCCTTCGCCTGCTACTCCCCGAGTTTGAATTCCCTGCAGGACCAGGCTTACAAATCCGCTGTGGTGATCGAGGGCAAGGTGCAGTCCGCGCCTCTGAACGTCTCAGCGGAGCCGTACGGTGTGAGTGTCAAAGTGCTGGACGTGTGGCCGCGGAACAGCGGGGGTCTAGGACGGGAGCAGCTCGTCACGGTGGGGGAATTCGGATCGGAGGCTCCGTGCACCACAGTGATAAAGAATCACAAGTACATTTTTTTCATGGACCCAACCGAGGATCCCTTGGTTTTCAAGGCATCGTATGCTCCCCTAGATACTAGTGGGAAGAACCTAAAAAAAGATGTTGGGAAGATATTGTGTGAAAACTGCGCTATTGCCCCAAAGTTAAAGCGAATGAGGAACCCACTGATGGTGGATGAGGGAAGCAGGCTCACGGTCAAATGTGAGGCTACAGGGAACCCCAGCCCTACCTACAAATGGTTCAAAGATGGCAGTGAGCTCAAGAAAAGCAGAGAGGTCAAAATAAAGTCCAGCCAGAAGAACTCCAGGGTCCAGATCAGCAGAGCCAAGCTGGAGGATTCTGGGAATTACACGTGTGTGGCAGAGAACCTTCTGGGGAACTCCAACTCCACCAGCACTGTTCATGTCCAAAGCATAACCACCACACTATCGCCAGGCTCGGGCCACGCCAGAAGATGCAACGACACCGAGAAGGATTACTGCGTGAACGGCGGCGACTGTTACTTTATACATGGTATCAATCAGCTCTCCTGCAAGTGTCCGAATGACTTTACTGGCGACCGCTGTCAAAACTACGTTATGGCCAGTTTCTACCAGCATCTTGGGATTGAATTTATGGAGGCggaggagctctatcagaaaagAGTCCTGACAATCACGGGTATCTGCGTGGCTCTGTTGGTGGTGGGAATCGTGTGTGTAGTGGCCTACTGCAAAACCAAGAAACAGAGGAAGAAGATGCACAATCACCTGCGGCAGAACATGTGTGCAGATCACCCCAACCGGAACCTAGCGAATGGACCCAATCACCCAGGACCTGGCCCTGAGGAGATACCCATGGTAGATTACATCTCAAAGAATGTTCCTGCAACGGAGCGTGTCATACGGCACGGAACAGTGGCTTCTTTCCCCGGCAGCCACGCGTCTTCCAGATCTCACAACTCCTATACCCATGCACGCTCCTCCACTCACAGACACGAGGAGCGGACGTGGAGCCTGGAGCGGACTGACAGTGTCCTCTCGGACTCGCCGGGCATGATGTCGTCCTCCGTGGGGACCAGTAAATGCAACAGTCCTGCGTGCATGGAGGCCCGGGCCAGGCGTGCCGCACACTGTGGCTTTACTGTGCCCCACCGGCCGGGATTGCAGTACGGAGACTCGTTCGACTCGCTGGGGGACTCTCCACACAGCGACAGGTATGTGTCGGCCTTGACGACGCCGGCCCGCCTCTCTCCAGTGGACTTCCATTACTCACTGCCCCCGCAGGTGCCTATCTTCCAGATCACCTCCCCCAACACCAGCCAGGCCATGTCCCTGCCGCCAGCCGCCCACACCCGCTACCCTCTGGAAGATGACCAGCCTCTGCTGCGGCGCTACCAGGTGCCCCTGCACGACGTCCAGCGCCAGGAGCCCTACCGGCAGCAGCGCCGCACCTACCTGAACGACAGCACGGGCAGCCTGCCCTCCAGCCCCTACCGGCTGGCTGAGGAAGAAGACTACGAGACCACGCAGGAGTACCTGTCCTCCCGAGAGCAACCAAAGAGAAGTGGGCCTGGTGGTGGAGGGGGTCGGCGCTTGCGGAGGTCCAGGCTGAACGGCCACGTAGCGCCGCGAGGATACGAGGCATCACGGGACTATGGCTCTCGCAGCTGTCTGACGGACAGCGATTCGGAGGAGGAAGAGGGCGAGAGCACGCCCTTCCTCAGTATGCAGAATATGAACGCGGAGCCCTCCACCATCTACAGGCCAGCCGACAGTCGGACTTCTCAGTCGCACTCTACGGGGCGGCACGGTGCACGCGGGAACGTACAGACCAGACAGACGCACTCGCGGTCCAAACCGGACAATGCACCCCACTAAAGAACGAAGTCGACCTACCAACTAAAAATCTATATACTATAAACCTGCACCTATaagaaatatttttattttatataactGACAGATATTCTAAACAAAtgaaatatttattttcattttagcAAAAGTTGTCTACTAGTTAACAGCAAAGACTTTTTTTATAGGGAAAACTCTATTTATATGTACATTTTGATTTACAGCATAAAAACACGTGCCAATTTTTTCACTACTTAAAAAATAGAGTAATATTGTGGTGCCTTTTGCTGTGTGCCGATGCCAGAGGGCCAGTGGAGATTTTTGCTGTGTGCCGATGCCAGAGGGCCAGTGGAGATTTTTGCTGTGTGCCGATGCCAGAGGGCCAGTGGAGATTTTTGCTGTGTGCCGATGCCAGAGGGCCAGTGGAGATTTTTGCTGTGTGCCGATGCCAGAGGGCCAGTGGAGATTTTTGCTGTGTGCCGATGCCAGAGGGCCAGTGGAGGTTTATGCTGGATGCCAGAGGGCCAGTGGAGAATTGTTGCTGTGTGCCGATGCCAGAGGGCCAGTGGAGAATTGTTGCTGTATGCCGATGCCAGAGGGCCAGTGGAGGTTTTTGTAGCCTTTTCTTATATGGACATCATTTTTTTTATACACATTTCCTCttttggctttttttttttttctgggaGTTTTTTCTAGCCCCATTTGAACATTACTCCTCCCCTTCCACATCATGCAATATAAACCACTTAATCATAAGGTGTATGTTTACATTAATATAATTTGCCTATAGGGTTTATCATTTTTGGCATCCAATAGAAAATCTGATAAATGCAACACAGGTCCTTTTTGCTCTCTGAGTGAAGgagtgtgtgtgggcatgtgtgtgtgtgttgtaccaaCTCATTGCTCTATTGGGCACCAAAGCAAGCGGAATCAGTAGAGGAAAGCTGCTGATGCACAGTGAGGCCCAACCTGGGTTCCAGGGTTGTGCTGCTGTTGGGTAGAGAGTTCTGTTGGGTAGAGAGTTCTGCATGTTGTTGCTTGATTTGTGTTTACAGCTGCCTCACCTAACCTCAACCACCCCACCCCGGCCATCCTTGTCCCAACAGGGTAAGGTTTTACTTCATGACCCCTCCTTGTCCCAACAGGGTAAGGCTTGTCTAATGACCCCCACTTTGTCCCAACAGGGTAAGGCTTGTCTAATGGCCCCCACTTTGTCCCAACAGGGTAAGACTTGTCTAATGGCCCCCTCCTTGACCCAAAAAGGTAAGGCTTATCTAATGGCCCCCTCCTTGTCCCAACAGGGTAAGCCCCCAACGTCCTGGCTTATCTGTGATTCTGAAGAAGAAATGCCACTTGTCAGTGTACAGTAGCAGTTAGTCTGCCATCAGTGATAGTGGCTCAATACAAAGAGACTTTCTCCCATGACCCCCATGCCGCCTCTTCCTCACCTGTCCATTTTGTCCCCGTGGCCAGAGTAAAGGGCCGCACAGCGTCTCAGgacttcaaccccccccccccctctcccccctccaccatcAGACCTACCTAGGACTTAAGGTCCCCACAAGGACATTAAGGTCACACCCAACTTGCTATTCCTCCCATCTAGAGAAAAGTAAAGCAGAGTgttgaacagaacagaacacactaCACCAATACAAGATAAATAGCTGTGAAACTTTGGAGGGTCATAAAATGCCAAAATATGCAAACTTTCCATTTTGCTCTGTTTGACATCATTTTCTAAGAGGTGACTGTAGTGTGTTGTGTGAAACCTATGTAATGCCTGTagtgtagaagaagaagaagcaccaTGATAGGAATACATATTTACATCATTATTAAAATTTCATGCAGTTATGTAGCCATTGCTCAAATTGTCATTTTTCCTCATTCACAGATTCATgttcatagattttttttttgggggggggggggggggtgttcatgAATTCTTATCTCACTATGTCGAGACCAAGCAGACAACACGCAAGTCTACAGGAATGACTAACCACTTTAAAGGGTCTCATACACTAACGTCGAGCGCTGCTCAGTCTTGTGGATAAGGATAGTGATTTGTTGCCTGTTATGAAGTATGTCACGAAAAGTTAACAAAACTGTTTGTTCAaacttctctgtcctccactcccccccaaaaatattgCAGGAGCTTGTTTTGGCAATCCATTTGAATTGTAGTGACAGAAAACAGTTGATAATCTTGCAGAACTGGTCATATACATTTTGAAACGCAACCAAAAACAACTCAAATGACTGTACCGGGACAAATCATCCGGTTAATCTagatgacaaccaaactgacaAGTAGGATTGGAAACAGAACGTGTAACTGTTGTAGGATGGAAGGCAGAGtgacacagacacatagacactgGTTTTCTGTCTCATCTCTCCTATGGATTTTCTCTCCTTCCGGGTCCTTCACAGTCTGGGTCTAATTTTGtatgtttgaaaaaaaaaatgcaaaagtAGACCGTGCTTCTTTAGTTAGTTTTAAATGTGATACCCCCACCCCCATCTTGACCCTCTCCTCACCTGATAGAAGTGCTGCCAGATTCATCCTGTTTTTCCTTTTTTCTTCCCTCCCCTCTTGAAATGTTTGAACACCTCTCCTCTGCATGTGCTTGTGGTCAAGGTTAGATGCGTGCATGGTGAAGAAGCagcagacttttttttttttggtcagtGAAAGTGTATTTCATTTCACATTCAGCAATAAAAAAAAGCCCCCCCACCCCATGTCCATTCTTGGAATATGCTAGAAACAAAATGTGAGATTGTCATAGATtgttaaataaaatgaaaaaatgaTCCACCTGTTCATATGATAAAATAAATCTTTATTCATATCATTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1019036 lncRNA upstream 34724 47224278 ~ 47224517 (+) True G895663
TU1019033 lncRNA upstream 41124 47217883 ~ 47218117 (+) True G895660
TU1019029 lncRNA upstream 46793 47212248 ~ 47212448 (+) True G895656
TU1019028 lncRNA upstream 48012 47211011 ~ 47211229 (+) True G895655
TU1019018 lncRNA upstream 68303 47190706 ~ 47190938 (+) True G895647
TU1019062 lncRNA downstream 8494 47383066 ~ 47384234 (+) True G895687
TU1019101 lncRNA downstream 14269 47388841 ~ 47404280 (+) True G895724
TU1019279 lncRNA downstream 148320 47522892 ~ 47545264 (+) True G895845
TU1019259 lncRNA downstream 150122 47524694 ~ 47541415 (+) False G895839
TU1019257 lncRNA downstream 188962 47563534 ~ 47577294 (+) False G895839
XM_036990522.1 mRNA upstream 107897 47132135 ~ 47151344 (+) False LOC110511048
XM_036990523.1 mRNA upstream 107897 47132166 ~ 47151344 (+) False LOC110511048
XM_036990518.1 mRNA upstream 107897 47132171 ~ 47151344 (+) False LOC110511048
XM_036990521.1 mRNA upstream 107897 47132180 ~ 47151344 (+) False LOC110511048
XM_036990519.1 mRNA upstream 107897 47132468 ~ 47151344 (+) False LOC110511048
LOC110533129 mRNA downstream 34815 47409387 ~ 47420005 (+) True LOC110533129
XR_005034163.1 mRNA downstream 46255 47420827 ~ 47426481 (+) False LOC118936698
XR_005034164.1 mRNA downstream 46255 47420827 ~ 47426481 (+) True LOC118936698
XM_036933223.1 mRNA downstream 52046 47426618 ~ 47849279 (+) False LOC110533130
XM_036933224.1 mRNA downstream 52046 47426618 ~ 47849279 (+) False LOC110533130
TU1019031 other upstream 42170 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 54399 47203246 ~ 47204842 (+) True G895652
TU1019024 other upstream 54617 47202925 ~ 47204624 (+) False G895652
TU1019023 other upstream 54617 47203246 ~ 47204624 (+) False G895652
TU1018992 other upstream 107692 47142044 ~ 47151549 (+) False LOC110511048
TU1019490 other downstream 535144 47909716 ~ 47910975 (+) True G896043
TU1019687 other downstream 860610 48235182 ~ 48235616 (+) True G896217
TU1020802 other downstream 1301685 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 1903130 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 2055827 49430399 ~ 49432958 (+) True LOC110534189

Expression Profile