RNA id: XR_005034163.1


Basic Information

Item Value
RNA id XR_005034163.1
length 3517
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC118936698
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47420827 ~ 47426481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caattggctcattcatccccctctcccctgtaactattccccaggtcgttgctgtaaatgagaatgtgttcatttacctggttaaaaaaaataattcagCTCATGTAACATGAGActgacactttacatgttgcgtttatatttttgttcagtatatatttcagAGATGGTTATTTACCAGATACTATTGCTCAGTGAGACAGTCAGTGTTTGCACTGTACCTCAAGCAAAACATTTCCAAAACCTATTGCTTAGTTGAACACAAaagcaatattttttgggggggcatgTTTAGTCATTATCTAAAGCAACTTAGTTAGTGCATTCGTCTTCAGATAGggaggtgagacaaccacatcagTCGTGGTAAGAACATTTTCCCCAAACAAAAAGAAGTGcaggttttatttatttgtacttaAAATAAGATGGATGTCTTATTTAAGATACTCCGTGAAGAGGTGGGGTTGTCTATAAGAAGCCAAGGATATGCTAGCTATCGAGCAATACATTAGCAATGCCAGTAACAATCCTATCTGTTTTCAGATGATCCTAAAGATTTAACCTCCCAGTAACCACTCACACTCTTCTCCATTCTACCCTGTGGGGTGAGCTGTCACAAAGACTGTTGCAGCCACCTTGCTGTTGAGTGCTGCAAACCAACAAATGTGCCGGTCACGATCCTTCAGTGTGCCTGATATGGTTTAGCCCCGACACGTTCTACATCCGAGGAAGCACCCGACTCTCTGGAGGATGAAGTGTTTGATGTCCACCTTTTTGAGGTGGCTGCGTGTCGTTTGGGTAGCGGACCATTCTACACGGAACATTTTTGAGTGTggaaaaaccccagcagcgttgcagttcttgacccactcaaaccagtgcgccggGCACCTACTCCCTTATCTCGTTCAAAGGCACgtgaatattttgtcttgcccgttcaccctctgaatggcacacatacacactccatgtCTCGGGGCTGataaatccttatttaacccgtctcctccccttcatctacacagatttTTGAAGTGCATTTAACAGGTGTCATCAATCAAGGGATCCTTAGCTTACaccagtcagtctgtcatggaaaggacCTGTCTCTAATgtttttgtacactgtgtatgtCAGCATCTCCTAGTGTGAGCAATGTGCCTGATCAAATGCTCTATCTGCAAGTGTTTTGAAGTAGTCTCTCTACAATTCCTATCTAAACTCATCCTGTTTTTAGACTGCAGTTCTCTATTTCCTGAATGAATTTTGTGGTCCACTTACTAGTTAATTTTCACATCAGAATGAAGACCAACATTGACGAGATCACAAACGTTTCCCATGCTGCCCAAGCTGAACTTAAATGAGGACCCGACAGCAATGACACTCCGACGATCTGTGTGATAGAAATGTTTTTGCTCCTGTTTGGATACGCAATGCACGCTAAGAACATTGCACATTCTCTGACTTTCTTGAATGTCCACATTTTCCCCACGTTTTAGAGCTATTGAACCTGAGGAAGGATTGTGTAACTGTGTAACTAACTATATGTTTACTTGCTAATGATACTTTGATTCAGTCATTGCATGTTGTGCTGatttgtgtatttattttctgaTGAATTAATCCTTCATTCTCTTGGCTATAGTATTATTTGCCCAGAGCTTTCACAGTAGGTAAACCTGGAGTACAGTAGATGCATATCTCTGCATGTGCTTGTATACGGCTCATGATTGCTGAAGGTTGCTTCTCCTCTAGGTGGGGAGGTTTTGTGTCAACACTGCATAGCGTAGGCTACCACTGGGATTTAGCATTTTGTAGTTCTTTCACATTCCCTGGTTTTAGTGTAGCCCTATGTTTGTGTATAAAATGTGGAttgttgatgacaaggtaaatTGAGGTTCTTTCCTCAGCTAGCCAACCATGTTCATGTTTGATTACATTGTATTGTGGTACAATTTTAAAAGGCAGAAAGATCTTCTATGGTTTTATATCATagaatagagatggcatcatgcCCAACTACTTTGGACTTTGCTACCTGTGTACATACAATATGCTGAGGAGTTATTTGTCTCGCTCTGTTACTCCCAAGTGATACTCCCATGAGGGAAGGCAATTAATTTACTCTGAGCAGTGGTTTCTAGGAACTTCAATACATAGCTGAGACGATTCTCTCCGGGATCGTCACACTGTAAAATGTGATAACAGCACAAATTTAGGCTACATTTTATACTTATTGCTTAAAGTCcgaggggttgtggtatatggccgatataccacagataagggctgttcttaggcgcAACACTGAGTGCCTGGATATATACCataaacccccgaggtgccttattgagattataaactggttaccaatgtaattagagcggtaaaaatacatgttttgtcatacccatggtatatggtctgtttataaactgggtggttcatgtcctgaatgctgattggctgaaagccatggctTATCGGTCTGTATACCACGGGTagaccggggcggcagggtagtctagtggttagagtgttggactagtaaccggaaggttgtaagttcaaatccccaagctgactaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgaaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaataaattactAGTGTAGCCTATAAGCAGATGTAGGCATTGTTTTACActtgccaatataccatggctaagggctgtatcagGGCACTCTGTGTCACGTCGTGTGTAAGAACAggccttagctgtggtatattggccatataccattgcttaaatataccacacctgtcagccaatcagcattccggGCTCGAACCGCCTATAATTTTGAAATCTATTCCTATTGCAACAAACATGACTTAAAAACATTCTTCTTCATATTTTGTGATAGAGCTTATCAATAATTTTGTCTTTCAAACAGATTCCAATTTAGAGCATTTTGTTATGTTGGACTTTAGTAGATATTCAGTTTGAGAAATAATGTTTAGTACTTTTGTGCTGTCTTTTATTTGAACCACTCATTTTGCAAACTTGTAACCTTCAGGTGTTGCTGGCACTCCTGTCAACTTCCAATTTGGTAGGCTGAGGATTTGTCACCATAGTAACTCCACCTCTGGCATCCTGTAGGCATTTACTGGCCTGTGAAAACTGAAGCCATCTCACAAGGGCTAGTCCTATTTATATTGTGGTCGTTTTTTTTAATAACGCAAGCAAGGTTATTATTGAGGGAGATGTCCAAACCCGTATGATCTTGTCACACTGCATTAACAGCTTTATGGAgctgagagagaaaataaagggCTTGGATTAGGTCCAAGGCCAGTTATCATGTGTGCAGGGTTTATACACATGAGAGCAGACTATTTATGTATGTGAAATAGGGTATATAATAgcctcatatttttttttttaaaagcacttGTTAAGTTATACACCCGAAATGCTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1019101 lncRNA upstream 16547 47388841 ~ 47404280 (+) True G895724
TU1019062 lncRNA upstream 36593 47383066 ~ 47384234 (+) True G895687
TU1019084 lncRNA upstream 77257 47292167 ~ 47343570 (+) True G895709
TU1019093 lncRNA upstream 114109 47301851 ~ 47306718 (+) True G895717
TU1019036 lncRNA upstream 196310 47224278 ~ 47224517 (+) True G895663
TU1019279 lncRNA downstream 96411 47522892 ~ 47545264 (+) True G895845
TU1019259 lncRNA downstream 98213 47524694 ~ 47541415 (+) False G895839
TU1019257 lncRNA downstream 137053 47563534 ~ 47577294 (+) False G895839
TU1019254 lncRNA downstream 164667 47591148 ~ 47597056 (+) True G895839
TU1019300 lncRNA downstream 178907 47605388 ~ 47616102 (+) True G895856
LOC110533129 mRNA upstream 822 47409387 ~ 47420005 (+) True LOC110533129
XM_021618798.2 mRNA upstream 46255 47259241 ~ 47374572 (+) False LOC110534120
XM_021618799.2 mRNA upstream 46255 47259242 ~ 47374572 (+) False LOC110534120
XM_021618800.2 mRNA upstream 46255 47310908 ~ 47374572 (+) True LOC110534120
XM_036990521.1 mRNA upstream 269483 47132180 ~ 47151344 (+) False LOC110511048
XM_036933223.1 mRNA downstream 137 47426618 ~ 47849279 (+) False LOC110533130
XM_036933224.1 mRNA downstream 137 47426618 ~ 47849279 (+) False LOC110533130
XM_036933225.1 mRNA downstream 137 47426618 ~ 47849279 (+) False LOC110533130
XM_036933226.1 mRNA downstream 313569 47740050 ~ 47849279 (+) True LOC110533130
XM_036933227.1 mRNA downstream 431009 47857490 ~ 47887278 (+) True LOC110534124
TU1019031 other upstream 203756 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 215985 47203246 ~ 47204842 (+) True G895652
TU1019024 other upstream 216203 47202925 ~ 47204624 (+) False G895652
TU1019023 other upstream 216203 47203246 ~ 47204624 (+) False G895652
TU1018993 other upstream 269278 47142044 ~ 47151549 (+) True LOC110511048
TU1019490 other downstream 483235 47909716 ~ 47910975 (+) True G896043
TU1019687 other downstream 808701 48235182 ~ 48235616 (+) True G896217
TU1020802 other downstream 1249776 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 1851221 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 2003918 49430399 ~ 49432958 (+) True LOC110534189

Expression Profile