RNA id: XM_036933226.1


Basic Information

Item Value
RNA id XM_036933226.1
length 5315
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110533130
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47426618 ~ 47849279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacagagactcactctcactcacacacacacacacacaggaacccgCTGCACCTCACTCTATCACAGTCTCTGACTATGCCTTCAGAAGAGCATTGCGCTGTGTGCTGTGCTCCCTCGTCAGTGAGCCCGTAGCGACCAGCTCAGGCTGTTACTTCTGATGTGCGTCTGGAGTCCAGGCTGTCCTGGGATTTCAGCCTTCCAGGATTCAGGGAGTCGATGCTCAAGCCGCTGCTCCAGTTTTAATTAGCATGGATTTCACCGCGGCAGCAGCCGGAGTCAACGTCTTCTCAGCCATCTACACCGTTTCGGCGAGAAGGAGTTTACTGCTATCATCCATATCCAGCTGCGTGTCATTGTCAATGTGAGCATCCTGGAGAACGAAGAAAAGGAGAGGTGAAGGAAAATGCAGCAGTAGTCTGTACTTCATGCGCTTGGGCAGCAGGTGGAGGGTGAGGGGGACAAGGATGCGGTGTCTGGAGCGCTGACTGCTATCCCACATCTAGAGGTGTTTCTAGTGGTGCTCTGACCCGCCAGAGGTGACCATTCAGAGGGGTTTGGTCACTGGGAATGTTTATTTGTTGATCTTCTGTGTTTTTCTTTGACCGCGCCGCTGCAGCTCTCGCTCCCCTACTcccgccctctcctccctctcctccaactaTATGGAAACAAGAGAGTGCTGGATTCTGTATCTCCCTCCATCAGCTTGGATCTTTTCTTCCGAATGAAATGATCTTGTTTCCTGTGGGGAGGTCTCTTATCTGTTCCTCTGCAGTGTGGGGGCTTTCGTCTTATTTGGGTAGTAGTCTTAGCTGCCCCCTCCCCACTCTGTTTTGTCATACTTTAATTTCATAATGGAAATGTATATTTCTAAATGACTTGTGGATTCAGCATTGTGTCATCACCATGCTTTTTGATAGACATGTTGGTGCCTAGAGGCTGACCTTCTGGAAGATATTGTCTTGGGATGATTGCACACCACTGCTTGGAATTTAATCCTCAGTTCAACATACACGTCAACGTATCTCAACATGGTGTGAACAAACAGAAATAGGATTCTCGCTCTGGGATTTCATGGTCAGACACAATAACTGGATTTTGTCTTTGTTTCACTTCCTCAGCAGTGGTTTTCCCCTccaaccattactaaaggagagATCTGGTCATATCTTTACCATTACCCAGTCCCTAGGATTATGGAGGGAACAGGCTTGGCGGCCCACTGAGATGTCCTGTCTTCGTGGGGTGGGACTGAGGGAGGCCCTGGGGGGCCCCTGTGCCAATCTGGAGGTTATGGTGGTGGGGAGCAGACTCCCACCAGGGGGCCCTGAGCTGGGCCAGGGGTCAGGCTGGAGAATCCTGGGCCTAAGCTGCTGGTGGAGGCTGGCATTGTCGTTGGCCTTGCTGGCTGCACTCCCCATCCAGGCAGGGACTGCTCGTGTGTCTTCCAGCCTAAGCACCACACACCATGTCCACCATTTCCACAATAAGCACGGCACGGTACCTATCGCCATCAACAGGATGCCTTTCCTCACCCGAGGAGGCCATGCTGGGACCACGTATATCTTTGGGAGAGGAGGGGCCCTCATCACGTACACCTGGGCCCCCAACGAGCGGCCGAGCACCAGAGCAGACCGGCTAGCTGTGGGCTTCAGTACTCAGCAGAAAGACGCCATCTTGGTCCGAGTGGAGAGCACCAGCGGACTGGGAGACTACCTGCAGCTACACATAGAACAAGGAAAGATTGGCGTGATCTTCAACGTGGGGACAGACGACATCACCATTGATGAGCCGGCTGTCATAGTTAGCGATGGCAAGTACCATGTTGTGCGCTTCACACGCAGTGGTGGCAACGCCACCCTCCAGGTGGACAACCAGCCGGTCGAGCGCTACCCACCAGGGAACTTTGATAATGAGCGCCTGGTTATTGCTAGACAAAGAATCCCATACCGACTTGGTCGGGTAGTTGACGAGTGGCTACTCGACAAAGGACGACAGCTGACTATCTTCAACAGCCAGGCAGCGATAAAGATCGGGGGTCAGGATAAGGGCCGGCCGTTCCAGGGCCAGATCTCTGGCCTCTACTATAATGGCCTGCAGGTGCTGACGCTGGCGGCAGAGAATGACCCCAGTGTCCAGGCTGAGGGGAACCTGAGGCTGGTGGGAGACTCCCTGTCTGTGCTGACCACTGAGACCACCTCCACCACCCCACTGGCAGCCTCCGACATGTCCACCACCATCATGgagaccaccaccaccatggccaccaccaccacccgcaGGCAACGCTCACCCAGCATGAGGGAGAGCATCTCCCAGtCTCAGAACTCGGATGACATCTTGGTGGCTTCTGCTGAGTGTCCCAGTGATGACGAGGACCTGGAGGAGTGTGAGCCTGGAACAGGAGGTGAATTAGTGTTGCCTATAATAACAGTGGATTCCCTTGAGCCCCCATCCATCGCCACCCGTTACCCtgctatcccccctcctcccacctccctgTCCCCACTTGAGACCACCAAAGTGTCCCTGATGCTGTCCAACCCTCACCCTCCCTGCCCCCCGGATCAGGAGGACTGCGGTGACCCTGTGGAGGTCTCGGCCTTCGGTTCTGGGGAGATGACGGAATCAGATGATGAGGACTTTTACAAAAACTCCCCTCTGGTCACTGATAGGACAGTCctgcatcctcctcctccccccgccGTCGGTGAGGGCGGGGCACAGAAACCCCACAATCCCCGCCCCCTTCCTTATGCTCCCACCACCAACCCTGACCAGCTCCACATCCCTGCGGGCAAAATGAACACCCGTGACCAGGTGCTTCTGCCCCCTGCCCCTCCGTCATCCCGGTATACACCTGGACTAACTTACCCCCCCAATTTCCCCCATGTGCCCACAGCCGACCCTACAGCCCCCGGTGAGAAGGTCATGCACCCCGGCCTGGTGGATAGGATCGGAGAGTCCAGTAGCACCACAGGGATGGTGGTTGGCATTGTGGCAGCTGCTGCCCTCTGCATTCTCATCCTCCTCTACGCCATGTACAAGTACCGCAACCGTGACGAGGGCTCCTACCAGACGGACCAGGGACACAACTTCATCAGCAACCCAGTTTCCGAGGGCAACGGGGCCATGGTCAAGCTAGAGAAGACACCAAGCACAACCACGGCTGCAGTAGCTAAGACAGTAACCAAGGGCAAGAAGAACAAAGACAAAGAGTATTATGtctaagagagggatggatagagaacgagagaacgagagagataggctagagcagggtttcccaactccagtcctcgaatACCCCAGagaagcacacctgattcaacttgtcaactaatcatcaagccctcaatcagttgaatcaggtgagtttgtcCGGGGCAGCAACAAagatgtgtgctgttgggggtactctgGGACTGTTGGGGTACACTGGGATAGAGGAAAATCATGGAAAGGGGGTTCTCACAAAGAATTTCACTTCCACATTATCGTCTAGATAAATATCCAAAGTGTAGGGTGTAATTGTTACATTTGtggcacacaaaaaaataaatccAATTTGCGATCAGTATTTCCACAATTCCTGTTAAATTATGCTTTGAGAATTTGTATCACATACCAAATATTGTATTGGATAACATACCATTTCATACAGGATAAGAAGCATATCCATTTAGCTGTGTTTGTATATAGCACCAATATCTATCAACTGTATGGTTATGGTTCCCAGTGAAAACTCAGTTTAAATCATTGTACTATAGAACCAAGTTTGCATGAATGTCAGTTCATCATGCTCTATCTCAAGTCCCTATGTCTTTGTAATGAAGTCAGCGGTATCAGTGTGTACTGAAAGGTCATTATGGTAGATAAGGACAGAGCAACCCAGTAGAGTTTACTAGATTAAACTAAAGCCATACCCATATTTGGAGATTGGGTGACCCACCTTCTCTGCAGACTAGCCTAACCCATTTTGTGTTATCCCACGTAAAACGGCTTTcaactctgtctatctctctggtTGTCCATGGTGCTATGTTAATGGTCCAATATCATTGAACCATGTTTCCTTTTGGGAAAATACAGGTTTTCAAAGGGAATACACCAGTTCACAGCATAATTTAGCCAACAAACCCACACCATTGGATGGATGAGATGAGCTGGATTCTCTCATCTCTGTGTGAGAAGAGATCACCAAACCGACAGTGTCATTCATTCCATCCAGGAACAAGTTCCTCAAGCTTAACAAATCTCAAAAAGCAAAACACTACTGTAGCAAAGACATTGCTCTGTAAACATATTTGTATGTATAGATGTATTGGGTTTGAAAAAGCATTGCTTCTGTGTTTGTTGGAgtagacagggggggggggggggggggaacagacaTGAAAAAGATACTACATGTGAGAGATGTTCTGCCCCCACGGTTACCACTGTCAACACTCCAGCCAGATCCCCCTATAAGGAAAGTAGAGACAGTGAATATGAAAGGGAGCTGCAGGACACAGTCACTTTTGAATAACTTTTTCTGGTTGTtcctgtgggagggggggggggggggacatgttcAAGCTTGTGTCAAGAGGCTGGCTTTCGGCTTTCCTTCTTCAAAATtggcacacaaaaaaaaactggAAAGGCACAAACAGTAGAAAAATCTCTTTGAGAGATAAATACTGTGTTACCTTTGAAAGCAAACCAAACATGTATTCTGGTTTTTCTACCCATGAATAAAAGACTGTTCTGTGAGATGAACTATTGAAGGTTTGTGAATTGTATAGCTACTTCTCAGATACTTCTGTGTATCTCTTGTTACCATTCCTGCAGTTCcgtttataaaaaatgttttcctTTTAATCCGATACAGATGAAAGGGAGCATTTTGTCTATGATGAGACACCATTGTCTGACTACAGAGACACATTATAAGTATTTAATTTTTTGCAATGTTGAATAACATGACATTTCCATTAAGGACAGGTTAGTGATTGTATGTAAACGTATCAAGAGAAAACACAAAGGATGATGTGCACTCTTTTGATTCATTTCTTCATTTCATGTACATTGAAAAACCTGGCTATCTTTGTCTGTTGTTGCCATTCTCTCTGTTGTATCATGTTTACATTTTCAATTCCTGTCATTTCATCTTGGTTTTTTTTATGACGTGCCATTTAACATAAACTTCTCAGAGTATATCCCTGTCCTAACTCAATGATATTGTAAAGTGTTCCTGTGAAATTAACCTTAATATGTGTACAGTACATTGACAGAGGGGAAATACAATTGGTTATATACTTCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1019298 lncRNA upstream 121314 47614295 ~ 47618736 (+) True G895855
TU1019300 lncRNA upstream 123948 47605388 ~ 47616102 (+) True G895856
TU1019306 lncRNA upstream 125838 47606354 ~ 47614212 (+) True G895862
TU1019309 lncRNA upstream 126734 47607220 ~ 47613316 (+) True G895863
TU1019254 lncRNA upstream 142994 47591148 ~ 47597056 (+) True G895839
TU1019491 lncRNA downstream 57960 47907239 ~ 47909591 (+) True G896044
TU1019547 lncRNA downstream 109185 47958464 ~ 47958684 (+) True G896098
TU1019501 lncRNA downstream 138438 47987717 ~ 47989065 (+) True G896052
TU1019505 lncRNA downstream 139854 47989133 ~ 47989348 (+) True G896056
TU1019573 lncRNA downstream 161582 48010861 ~ 48011074 (+) True G896122
XR_005034163.1 mRNA upstream 313569 47420827 ~ 47426481 (+) False LOC118936698
XR_005034164.1 mRNA upstream 313569 47420827 ~ 47426481 (+) True LOC118936698
LOC110533129 mRNA upstream 320045 47409387 ~ 47420005 (+) True LOC110533129
XM_021618799.2 mRNA upstream 365478 47259242 ~ 47374572 (+) False LOC110534120
XM_036933227.1 mRNA downstream 8211 47857490 ~ 47887278 (+) True LOC110534124
XM_036933230.1 mRNA downstream 52280 47901559 ~ 47905308 (+) True LOC110534126
XM_036933232.1 mRNA downstream 88084 47937363 ~ 47950461 (+) True cfb
XM_036933233.1 mRNA downstream 114156 47963435 ~ 47987449 (+) False LOC110534131
XM_036933234.1 mRNA downstream 114157 47963436 ~ 47987449 (+) True LOC110534131
TU1019031 other upstream 522979 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 535208 47203246 ~ 47204842 (+) True G895652
TU1019024 other upstream 535426 47202925 ~ 47204624 (+) False G895652
TU1019023 other upstream 535426 47203246 ~ 47204624 (+) False G895652
TU1018993 other upstream 588501 47142044 ~ 47151549 (+) True LOC110511048
TU1019490 other downstream 60437 47909716 ~ 47910975 (+) True G896043
TU1019687 other downstream 385903 48235182 ~ 48235616 (+) True G896217
TU1020802 other downstream 826978 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 1428423 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 1581120 49430399 ~ 49432958 (+) True LOC110534189

Expression Profile