RNA id: XM_036933230.1


Basic Information

Item Value
RNA id XM_036933230.1
length 2948
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110534126
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47901559 ~ 47905308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaggtgttgtgtgtagatgggatTGTGTGTAATGTGGATTTTTAACATTTTGaagtcaggctgtaacacaacaaaatgtggaataagtcaagggatatgaataatttctgaatgcactgtaacatAAGCAGACAAACAGATTAGGGGCAGAAGACATTAATTGAAATTTGATGCAAATTGGAAAAAGTCCAATGCTTTCACCATTGACTGGAGGCTTTCACGGATATTTTCGATTTTACTGATTTTACTCTTGTAGTGGTACAAATTATGTGATAGCTAAAAAGCAATTAAATCGTGTGTCCCTTGTGACATAACGAGTTCTTAAATTAATAACAGGCGGTGTTCCGTGTGTTCTATTTCTCAGAATTATTTTTCCAAACGGGAGAATGGGGTCATAAAAAGTGGCCTCTGTTCTGGGAATAATTTTGTAAAAAATGTGGGGCGCACATCGTAATTCGGTCATCTTAAATGGTTGTATAAATTCGCCAGTTAACCAGAAGTGTAATCAATGCGCAGAACCTCAAAATGTAAAGCCTAACAAATCGCATTTTGTGACTTTGAAGACACGCAGCTTTGTTGATTGGAGCTGTTTGAAGGTAGGTTGGAGCGCAGTGCCCACCACCAACTCCATGTCGACTTCGTTTAACTAATTGGCATAAATGGCAGGTTCACATTATTAATTAATTCATCTGGCTATCAATTGTCTGATACAGTGaaatagagaaatagagggaCAAATAGAGAAAACGTAACCAGGCAACTGGATCAATAATAAATCAACATGGAAATCAACTTTAATGCATGGAAAACTATGGGATGGATTCAATCCGTATTACTGTAGATCCgtaatttctgattgagccgacatGTGCAGCGTGTaccatgaatgcagtctctgcgACTGCGGGACCATTGCCTTTCACGCTAAAAAGCGGATATTCAGTGCTACGGAATGAATAGAGCCCATACTTTCTTCCAAGGTTTCAGAGCtctcatgttgttgtttttttcagccTGTCTACATACCTTTGAAGTGCATTACCGTTGAAATTGTCACCACACCCTTGGACAGTAAATGTGAGGAAGGAGTAAGGAGCGGCAATGAAAAGGGGCACAAAGAGTCAGCGACCTCGGTGACATGTGAGAATGAGGAGGACATGGATGAAGGGTTTACAGGGACTCTGCTACCTGCGAGAGATGCTCCTTCGTGGATGTGGGAGGGCTTCTCCATAGATGACTACAACCCAAAACCCCAACCAAAGATCATCACACCCAAACTGAAGGAAGATAAGAGATGCCTACCCAAAGTGACCGTGCCGCAGCCTTTCAAGATGACCCTGCGTGAGGAGAGCGAGGGGCAGAAGCAGAGGCAGCTTAGGAAGGCCTGGGAGGAGACTGCCAACAAGCCCACAGCCACGCTGCCTCGATTCAAAGCGAACCCTGTTCCCAAGAGCAACCAGTTGCCCTTGTATGATAAGATCGTAGAGGAGTGTGAGAGGCAGAGAAAGGTTCTCTATGAGAAACGGAGAGATCTCATGCTGGCCATGCAACAGCCCTTTAACTTGGGGTCAAAGGTTGCACATGGTTCTGCCAAGAGGATGGCTGTAGCTGAGGGTGATGGAGATGGAACAGCAGCCAAGGAGGGAGACGAGGGTCCAAAGCCGGAGAGTTCAGTTCCTGTCCGCTCCTATAAGGACATACTGAAAAGATGTGCCCAGCTGGCTACTCGTCATCCCCCTCCAACGGGAGTGGAGAAGAAGCTCACTTTCCAACCCGTTATCAACCGGACTATACCTGACTTTGGGAGGTTGCACCACAGGTTTGAGGACCGTCTCAGGAGTGTCAGACAGGGAATGCATTCCACTGTGCCACAGCCTTTTAGTTTCCAGGTGAACGCTGGAGGGGATCAGACTGTCAGTACGTCTAAGAAAACTCAAAAGCATGGCAAGAAGGACCCATGCCCCGTGGTGAAGTGGGAGCTAGCTAGAATTCTGGCCAGCTCACAAAGACTTACCAAGTCTGCACTGCTACGAGAGGAGGCTGCGAAGAAGAGACTAGTAACGAGAGAGAAGAGACTGAGAGCAGAGCAGCAGAAGTCAGAAGCTGGCTGTAGTCTTCAGAAAGAAGTGGCCAAGTGGCTCAACGCCCAGAAACAGCGCAGTACTGCCAGGGCACAGCGGCAACAACAGAACTTCAGACCCGGAGAGAGGCAGACAAGCGTTTCTCCCTGATCCTGGAGCGGGCTGGGCTGGACGAAGCTCTGCTGTGGAGCAAGGCTATGCTCCAGGAACAGGGCCAGCGTTTACAGCTGGAGGCCACAGAGGAAGCCTAGGAGGGCACTGATACTGATCTCCATGAGGAGCTTGCAGACTCCTCTGAGGGACGAACCCTGACAAAGACATGTTTTTACTAGTGTATTAAATTACAAGTGTTTGATCACATTCAAATTGTATGTTGCATCTCTCTACCATCTTATATCAGTGCATTCTTTGAGAAGTCACACTGTTGATATGCAACTaagatatgcaactgttcagggaagtcaggaaccaatacacacagtcagtcaggaaagcaaaggctagctttttcaaacagaaatttgcatcctgtagctctatatccaaaaagttttgggacactgtaaagtccatggagaataagagcacctcctcccagctgcccactgcactgaggctaggtaacacggtcaccaccgataaatccatgataatcaaacATTTCAGTtagcatttctctatggctggccatgctttcctcctggctaccacaaccccggccaacagctccgcacacCTCGCAGCTACTTGCCAGAgcatccccagcttctccttcacccaaatccagatagcagatgttctgaaagagctgcaaaacctggacccatacaaatcagctgggctagacaatctggacctctctttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1019298 lncRNA upstream 282823 47614295 ~ 47618736 (+) True G895855
TU1019300 lncRNA upstream 285457 47605388 ~ 47616102 (+) True G895856
TU1019306 lncRNA upstream 287347 47606354 ~ 47614212 (+) True G895862
TU1019309 lncRNA upstream 288243 47607220 ~ 47613316 (+) True G895863
TU1019254 lncRNA upstream 304503 47591148 ~ 47597056 (+) True G895839
TU1019491 lncRNA downstream 1931 47907239 ~ 47909591 (+) True G896044
TU1019547 lncRNA downstream 53156 47958464 ~ 47958684 (+) True G896098
TU1019501 lncRNA downstream 82409 47987717 ~ 47989065 (+) True G896052
TU1019505 lncRNA downstream 83825 47989133 ~ 47989348 (+) True G896056
TU1019573 lncRNA downstream 105553 48010861 ~ 48011074 (+) True G896122
XM_036933227.1 mRNA upstream 14281 47857490 ~ 47887278 (+) True LOC110534124
XM_036933223.1 mRNA upstream 52280 47426618 ~ 47849279 (+) False LOC110533130
XM_036933224.1 mRNA upstream 52280 47426618 ~ 47849279 (+) False LOC110533130
XM_036933225.1 mRNA upstream 52280 47426618 ~ 47849279 (+) False LOC110533130
XM_036933226.1 mRNA upstream 52280 47740050 ~ 47849279 (+) True LOC110533130
XM_036933232.1 mRNA downstream 32055 47937363 ~ 47950461 (+) True cfb
XM_036933233.1 mRNA downstream 58127 47963435 ~ 47987449 (+) False LOC110534131
XM_036933234.1 mRNA downstream 58128 47963436 ~ 47987449 (+) True LOC110534131
XM_021618818.2 mRNA downstream 116750 48022058 ~ 48029576 (+) False rin1a
XM_036933238.1 mRNA downstream 116752 48022060 ~ 48029576 (+) False rin1a
TU1019031 other upstream 684488 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 696717 47203246 ~ 47204842 (+) True G895652
TU1019024 other upstream 696935 47202925 ~ 47204624 (+) False G895652
TU1019023 other upstream 696935 47203246 ~ 47204624 (+) False G895652
TU1018993 other upstream 750010 47142044 ~ 47151549 (+) True LOC110511048
TU1019490 other downstream 4408 47909716 ~ 47910975 (+) True G896043
TU1019687 other downstream 329874 48235182 ~ 48235616 (+) True G896217
TU1020802 other downstream 770949 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 1372394 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 1525091 49430399 ~ 49432958 (+) True LOC110534189

Expression Profile