RNA id: XM_036933236.1


Basic Information

Item Value
RNA id XM_036933236.1
length 2960
RNA type mRNA
GC content 0.55
exon number 21
gene id LOC110534132
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47990312 ~ 48010716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtaatcctgctgacatggtcgccagttgtacggtgtttccctccgacacattgaccttcACCGCCTGGTGCAACTCTCACCTGCGTAAAGCGGGCACACAGATTGAGAACATTGAGGAGGACTTCAGGAATGGACTCAAACTCATGTTGCTGTTGGAGGTCATCTCAGgtgAAAGGCTTCCCAAGCCAGACAAAGGCAAAATGCGTTTCCACAAAATCGCCAACGTGAACAAGGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAGCTGGTGTCCATCGGCGCCGAGGAGATTGTGGATGGTAATGTGAAGATGACCCTGGGGATGATCTGGACCATCATTCTGCGTTTCGCCATCCAGGACATCTCTGTAGAGGagacCTCTGCTAAGGAGGGGCTATTGCTGTGGTGCCAGAGGAAGACTGCCCCCTACAGGAATGTCAATGTGCAGAACTTCCACATCAGTTGGAAGGATGGCCTGGCACTGTGTGCCCTCATCCACAGACACAGACCTGACCTCATTGACTACTCCAAACTGCGCAAGgatgacCCCATGGGCAATCTCAACACTGCCTTCGAGGTAGCAGAGAAGTACCTGGACATCCCCAAGATGTTGGATGCTGAAGATATTGTGAACACCCCAAAGCCCGATGAGAAAGCCATCATGACCTATGTGTCCTGCTTCTATCATGCCTTCGCTGGAGCCGAGCAGGCCGAGACGGCTGCCAAGAGGATCTGCAAGGTGCTGGCTGTCAACCAGGAGAACGAGAAACTCATGGAGGAGTATGAGAAGCTGGCCAGTGAGCTGCTGGAGTGGATCCGTCGCACCATCCCCTGGCTGGAGAACCGTGTGGCCGAGCAAACCATGCGCGCCATGCAGCAGAAGCTGGAGGACTTCCGTGACTACCGTCGTGTCCACAAGCCTCCCAAGGTGCAGGAGAAGTGTCAGCTGGAGATTAACTTCAACACCCTGCAGACCAAGCTGAGGCTGAGCAACAGGCCAGCCTTCATGCCCTCCGAGGGCAAGATGGTGTCGGACATTGCCAATGCCTGGAAGGGTCTGGAGCAGGTAGAGAAGGGCTATGAGGAGTGGCTGCTCACTGAGATCCGCCGCCTGGAGAGGCTGGACCACCTGGCTGAGAAGTTCAAGCAGAAGTGTTCCCTGCATGAGTCCTGGACCTCAGGTAAGGTGGAGCTGCTGTCCATGAAGGACTATGAGTCTGCCTCACTGATGGAGATCCGTGCCCTGATGAGGAAGCACGAGGCGTTTGAGAGCGACCTGGCCGCCCACCAGGACAGAGTGGAGCAGATTGCTGCCATCGCCCAGGAGCTCAATGAGCTGGACTATCATGACGCCGTCACCATCAACGCCCGCTGCCAGGGTATTTGTGACCAGTGGGACAACCTGGGCACCTTGACCCAGAAGAGGAGAGACTCACTGGAGCGTGTGGAGAAGCTGTGGGAGACCATCGACCAGCTGTACCTGGAGTTTGCCAAGAGAGCAGCCCCCTTCAACAACTGGATGGACGGAGCCATGGAGGACTTGCAGGACATGTTCATTGTGCACAGCATTGAGGAGATTCAGagtCTGATCACAGCCCATGACCAGTTCAAGGCCACTCTGCCAGAGGCTGATAAGGAGCGCATTGCAACCATGGGCATCCAGAATGAGATCGTGAAGATCGCGCAGACCTACGGCATCAAGCTGTCAGGAGTCAACCCCTACACCAACCTTTCCCCCCAGGACATCACCGACAAATGGGATGCTGTGAAACACCTGGTGCCCCTCAGGGATCAGATGCTGCAGGAGGAGGTGGCCAGGCAGCAGTCCAACGAGAGGCTGAGGCGCCAGTTCGCTGCCCAGGCCAACATCATTGGACCCTGGATCCAGACCAAGATGGAGGAGATCAGCCACGTGTCTGTGGACATCGCCGGCTCCCTGGAGGAACAGATGAGCAACCTGAAGCAGTACGAGCAGAACATCATAAACTACAAGTGCAACATCGACAAGCTGGAGGGAGACCACCAGCTCAGCCAGGAGTCCCTCATCTTCGACAATAAGCACACCAACTACACCATGGAGcatgTGCGTGTAGGCTGGGAGCAGCTCCTGACCACCATTGCCCGCACCATCAACGAGGTGGAGAACCAGATCCTGACCCGAGATGCCAAGGGCATCAGCCAGGAGCAGCTCAACGAGTTCAGAGCCTCATTCAACCACTTTGACAGGAAGAGAAATGGTATGATGGACCCAGATGACTTCCGCGCCTGTCTCATCTCCATGGGATACGATCTGGGTGAGGTGGAGTTTGCCCGCATCATGACGCTGGTGGATTCCAACAACACAGGTGTGGTGACCTTCCAGGCCTTCATCGACTTCATGACCCGTGAGACTGCCGAGACAGACACCGCCGATCAGGTCATGGCCTCATTCAAGATCCTGGCCTCTGACAAGACATACATCACAGTGGAAGAACTGCGCAGGGAGCTGCCCCCAGAGCAGGCCGACTACTGCATCAGCCGCATGACCAGTTACATCGGCAGCGGCGCGCCCCCAGGCGCCCTGGACTACATCTCCTTCTCCAGTGCCCTGTACGGAGAGAGCGACTTATAAACACAACCCAGAccctctactgttctgttccccaAGACCACCCACAGGCTTTGCTCCGATGCCCTGAACTTCATTAGTAACCGTCAGGTCAACCAAGAACCCTTGAGAGAGCAAATATGAACTTTCACAATATCAGGATTCCTATATTCGTCACTGTCTGCAGTTTATGATTTCGCAATGTTTGGCCCAGCAAGGCCACTAGACTGTGAGTAGTTAAACTGAGGCACTTGTATCAGGACCTTTTTATTCTCATTGACTAAGGCACTAGGAGCAAAGCCGCCCTCATACTCATTCGGGCGACTTTTGTTTTGGAGAAGGGAAAAAATTAAAGTACTTTAAGGAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1020356 lncRNA downstream 965 47989132 ~ 47989347 (-) True G896842
TU1020340 lncRNA downstream 39624 47873629 ~ 47950688 (-) True G896826
TU1020326 lncRNA downstream 123243 47866619 ~ 47867069 (-) True G896813
TU1020147 lncRNA downstream 333438 47656333 ~ 47656874 (-) True G896648
TU1020084 lncRNA downstream 424374 47564585 ~ 47565938 (-) True G896592
TU1020341 lncRNA upstream 3464 48012083 ~ 48017576 (-) True LOC110534135
TU1020432 lncRNA upstream 13455 48022074 ~ 48022533 (-) True G896913
TU1020433 lncRNA upstream 14431 48023050 ~ 48023301 (-) True G896914
TU1020442 lncRNA upstream 35577 48044196 ~ 48044522 (-) True G896923
TU1020443 lncRNA upstream 36228 48044847 ~ 48045127 (-) True G896924
XR_002475085.2 mRNA downstream 32821 47951964 ~ 47957491 (-) True LOC110534130
XM_021618812.2 mRNA downstream 73866 47911037 ~ 47916446 (-) True LOC110534127
XM_036933231.1 mRNA downstream 74092 47911037 ~ 47916220 (-) False LOC110534127
XM_036933229.1 mRNA downstream 90316 47887391 ~ 47899996 (-) True zgc:165604
XM_036933228.1 mRNA downstream 94925 47887391 ~ 47895387 (-) False zgc:165604
XM_021618822.2 mRNA upstream 7266 48015885 ~ 48021514 (-) False LOC110534135
XM_021618821.2 mRNA upstream 7266 48015885 ~ 48021620 (-) False LOC110534135
XM_021618820.2 mRNA upstream 19958 48028577 ~ 48038406 (-) False LOC110534134
XM_021618819.2 mRNA upstream 19958 48028577 ~ 48038667 (-) True LOC110534134
XM_021618823.2 mRNA upstream 38268 48046887 ~ 48049905 (-) True LOC110534136
TU1020355 other downstream 1236 47987761 ~ 47989076 (-) True G896841
TU1019905 other downstream 757266 47230804 ~ 47233046 (-) True LOC110534118
TU1018170 other downstream 2071973 45917279 ~ 45918339 (-) True G894917
TU1018024 other downstream 2239981 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other downstream 2242359 45747315 ~ 45747953 (-) True LOC110534046
TU1021210 other upstream 873108 48881727 ~ 48884075 (-) True LOC110534172
TU1023166 other upstream 2147573 50156192 ~ 50156902 (-) True G899409
TU1023178 other upstream 2173777 50182396 ~ 50182788 (-) True G899421
TU1023349 other upstream 2456848 50465467 ~ 50471878 (-) False LOC110534220
TU1023512 other upstream 2712367 50720986 ~ 50721603 (-) True G899727

Expression Profile