RNA id: XM_021618858.2


Basic Information

Item Value
RNA id XM_021618858.2
length 1571
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110534150
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48294185 ~ 48305120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacgccGCGTTGAAATTTGCTGAACACATCAAATCAATAGGAGAGATCTAGCTGAGAATTGTTCCTCGCTATTGAGTTTTATAACGTGAACATCCTGCGGGTTGTCGGACAAGGAAGATGTCAGATCCCACGGTGGCTGATACTCGCCGGTTAAATTCAAAACCTCAGGACCTGACGGATGCTTATGGTCCCCCCAGCAATTTTCTTGAAATGGATGTTTATGACCCCCAAACTGTTGGAGTCGGGCGGAACCGTTTCACAACGTACGAAGTCCGTATGCGGACAAACCTGCCGATTTTTAAGTTGAAGGATTCTACTGTGCGAAGAAGATACAGTGACTTTGAGTGGCTGAAGAATGAGTTGGAGCGAGACAGTAAGATTGTAGTGCCTCCCTTGCCTGGGAAGGCACTGAAGAGACAGCTACCTTTCCGTGGGGATGAAGGCATTTTTGAAGATGCTTTCATTGAAGAGCGGCGTGTGGGTCTTGAGCAGTTCATCAACAGAATTGCAGGTCACCCTCTGGCCCAAAACGAGCGCTGTCTTCACATGTTTTTGCAGGACGAGAGCATCGACCGCAACTACGTTCCCGGAAAGTAATGGAAAGACCATCTGATCATGTGACGCAATTGTTTGGACTCCAGATCCAGTAATCCAGAGGCAAGACGTGCCGAACGCAGACCAGGACTCGTCTGTTTTATCACCTCGGCCTGATTAAGCCTACCGCACCCTATCCCCGTCGTGGCCGCAACCACCTTTGACAGCTGCCTGCGTCACTCTCTAATGCCTTGTACTGTATACAAAAAGTATATTCTGCTAGTTGCCCCAGCAACAATGGTGCATGACCCTCTGCAGCACTGTATTGGGGCTGTTTACTCCAAGAACACTAAATGGGGGGTGTGACAGGGAAGTTGGTGCATTGTTGGAGATATATAAAAATACATGAGAAATAGTGTTATCCCATCTAAGTATTCAATCATAATGTCTCTGTCCCTTCATACCCACAGTAACCAACATTGTTCTTCCAATTGTATGTTTCCCATCTCTGATGGATGTCAGTAAATTATACCTTCCAAAGTTAATCAAAACAACTATTTTAAATGGGAGATTTACTTCCTGTAGCATGACATTCCATGTTTCTTTGCACGTCAACATGCTCTTCTTAGTGTGATTTTTgtattatgattttttttctttctgtaaCTTTGCCTTGAGCTCTGCATAAGTTGTCTTCAGTCTGCTTATGGAATGTCAGGTAACTGTCAGGTAATCAAACCACTGTGAAAACAAGGGGCTGATCAATAATCCACACATTTTTATTGATAAAGCTTTCGGCATGAAGTTTATTGACCCAAAGTATTCTTTCAATTGCTTTCTGTCATGTATTTTACCTTTTCATCATTCTGTACATTTAATCATGCAGCTTTCAGTTTTCATATAAACTGCCTTGTTTGTACTATCAATAAAATCTCTGCCTGCTGTGCCATGTCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1019696 lncRNA upstream 46099 48247229 ~ 48248088 (+) True G896226
TU1019680 lncRNA upstream 73538 48220368 ~ 48220649 (+) True G896212
TU1019678 lncRNA upstream 75780 48218050 ~ 48218407 (+) True G896210
TU1019649 lncRNA upstream 88834 48201242 ~ 48205353 (+) True LOC110534146
TU1019608 lncRNA upstream 134945 48154507 ~ 48159242 (+) True G896146
TU1020670 lncRNA downstream 196774 48501894 ~ 48503743 (+) True LOC110534159
TU1020674 lncRNA downstream 219406 48524526 ~ 48524766 (+) True G897121
TU1020720 lncRNA downstream 233422 48538542 ~ 48539048 (+) False G897165
TU1020721 lncRNA downstream 233422 48538542 ~ 48539153 (+) True G897165
TU1020764 lncRNA downstream 291231 48596351 ~ 48621973 (+) True G897207
XM_021618851.2 mRNA upstream 88813 48201385 ~ 48205374 (+) False LOC110534146
XM_021618850.2 mRNA upstream 106667 48169002 ~ 48187520 (+) False LOC110534145
XM_021618849.2 mRNA upstream 106667 48178338 ~ 48187520 (+) True LOC110534145
XM_021618845.2 mRNA upstream 135897 48143128 ~ 48158290 (+) False LOC110534142
XM_036933253.1 mRNA downstream 2831 48307951 ~ 48321819 (+) True LOC110534152
XM_021618862.2 mRNA downstream 28209 48333329 ~ 48336841 (+) True rab38c
XM_036933270.1 mRNA downstream 32389 48337509 ~ 48354802 (+) False LOC110534154
XM_036933259.1 mRNA downstream 32390 48337510 ~ 48354802 (+) False LOC110534154
XM_036933263.1 mRNA downstream 32390 48337510 ~ 48354802 (+) False LOC110534154
TU1019687 other upstream 58571 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 383212 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1077116 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1089345 47203246 ~ 47204842 (+) True G895652
TU1019023 other upstream 1089563 47203246 ~ 47204624 (+) False G895652
TU1020802 other downstream 371137 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 972582 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 1125279 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 1729870 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 4145098 52450218 ~ 52475365 (+) True G901849

Expression Profile