RNA id: XM_036933253.1


Basic Information

Item Value
RNA id XM_036933253.1
length 5500
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110534152
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48307951 ~ 48321819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCCCTTCTATTAATCCGGTTGACAAAGCTACAGCGGATATAGTGAAAAGCCCTTGGAGCTAGCTCAGTTGCTGGAGTGAAAGATTTTGAAAGGGGAATGACATGCACAACACAACGGGCTTGAAAGGGCATAATGACTGCACACCTCTCCTGGATTTGTAGTAGAATTTCTCTGAATTTTGCTTTTAAAAAACTATGTAAAGATCAGTGTGGGTCTATCTCAATCATTTTCAAAAAAGCTTCCTCTCCCTGTTGCATTTCCTTCATTTGCACCGACGCGAAAGAAGTCGAGAAATTAAAGCGTAATTGCGTTTCGCCTCGTATGTTTTAAGATCAGTGCAATTGGTAGAGTGGAGGCGAATCGAGGAAGACACTGTAGTACATTGGAGATGCACCCTGGAATACATGAATGGTTTGCGCCACCCGACATAGGCGAGGGTTGTTTATACTACGAATATCCACGTCACTGTGTCCGCCCTGTTAACCAAAAAAACCGACACACAAGAACTAAGGAACGCGGGGTTGTTTCATCAGCGAACGTGAAGTCAACTGTTTTGGTCGTGTTGTCGAGCCTTCGAACATTCCAAAGTAAACCCAAAGGATCTCTCCCGCTCCGTCTCAACTCTTCGCCGCTCTGCTCAGTCAACCCCTTCAGCTTCGCAGCTCCCTCCGCAGACGCGACCATGGTAGACCAGATGGCCTCCTTTGGGCGGATCTTGTTGCGACGCAGGGTACTGGACTGTTCCGATGAGGGAAGCCGATTCGCCCGCTGCCTCTCCACACTGGACCTGGTGGCCCTGGGGGTGGGCTCTACGCTAGGGGCAGGGGTGTACGTCCTAGCTGGTGAGGTAGCCAGGGAGAAGGCTGGTCCTGCCATCGTGCTCTGCTTCCTCATCGCTGCGCTCTCCTCCATGCTGGCCGGACTCTGTTACGCTGAGTTTGGCGCCCGCGTACCCAAGACTGGTTCGGCGTACCTGTACAGCTACGTGACGGTTGGCGAGATCTGGGCTTTTATCACGGGGTGGAACCTCATCCTCTCCTATGTCCTCGGTACAGCCAGTGTGGCCCGAGCCTGGAGCTCTAATTTTGATAGCCTGGTGGAGCAAAGGATATCAGACTTCTTCAGGTCATCCATGGCCATGAGCGCCCCGGGTGGGGTGTTGGCTGAATACCCGGACCTGTTTGCGCTCATCCTCGTGCTCTTATTAACCGGGCTGCTGGCGTTTGGCGTGAGTGAGTCGGCTCTGGTGAATAAGATCTTCACAGGGGTCAACCTGGTGGTGCTGGGCTTCGTCATCATCTCAGGCTTTGTGAAGGGAGACACAGTTAACTGGAACCTTACTTTGGAGGACTTTAACAACGCCAGTAACACCAACGTGTCCAGCTTATCCAAAGAGGTTGTGGATAAGACGTTTGGCACTGGTGGTTTTGCTCCTTTTGGCCTCCGTGGCATTCTGTCTGGTGCTGCCACGTGTTTCTATGCCTTTGTGGGGTTTGACTGCATCGCCACTACAAgcgaAGAGGCTAAGAACCCAACTCGCTCCATCCCTGTGGGCATCGTGGCCTCTCTGCTCATCTGTTTCTTCGCCTACTTCGGGGTGTCTGCGGCCCTCACACTCATGATGCCCTACTACCTGCTGGACACCAAGAGCCCTCTGCCAAAGGCCTTCATCCACGTAGGCTGGCCTGCTGCTCACTACATCGTGGCTGTGGGCTCCCTCTGTGCTCTCTCCACCAGCCTGCTTGGGTCCATGTTCCCCATGCCGAGGGTTATCTACGCCATGGCAGAGGATGGGCTCCTGTTCCGGGGCCTGTCCCGCATGAACACGCGTACCAAGACGCCCCTGATGGCCACCATCGTCTCTGGCTGTGTGGCATctctgaTGGCCTTCCTCTTTGACCTGGCTGCCCTGGTTGACCTCATGTCCATAGGAACACTGCTGGCCTACTCACTAGTGGCCATCTGTGTGCTCATCCTCAGGTACCAGCCGGGCACCCTGAGCTCGTCCAGTCAGAGTGAGAAGCTGGTGGAGCTGGTGGGAGGGGAGAAGGTGGCCGTGTCCGGGCGAGACAGCGGTGACGAGGACGGCCTGGATCTGGAGGACCGACCCCTCCGGGAGAAGTTCACCCCCCGCCGCCTCCTCTTCCCCAGCGGGAATCTACCCACTAAGATCTCTGGGAACATCGTCTATGCCACCACGGCCGTTATCTCGGTGCTCATCACTGTGCTGTGTGTGGTGTTGGCGGGGAAGCTGGATGAGTTGATCGAGGTTCAGCCTGTGTGGGTCACGGTGTGTGTAGTACTGGCCTTGCTCTGTGCCCTTTGTGTCGTCATCATCTGGAGGCAGCCCGAGAGCAAGGAGGCTCTCACCTTCAAGgtgccCTTGTTGCCTTGGCTGCCTCTGTTCAGTGTCTTTGTCAACATCTACCTCATGATGCAGCTGGACCTGGCTACGTGGTGCCGCTTTGCTGTTTGGATGGGCATTGgATTTGCAATCTACTTCTGCTACGGGATCTGGCACAGCAGCGAGGCAGTCAACAGCACCCCCCGGAAATACGAGCCTGCCCTCCAGACCAAGAAGAAGCCCATCTACCTGGGGAGAGACGAGAGTGAGGCGGAGGGGTTGAGCACCTGAACGGCTAGGGGCTGGAGGAAACCCCACACGTTATACCACTGAAAGGAAGGCAGACAATTCAACTGACACTGCAATGTGTGTCTCTAGATTGGTTACCTTTCATTTTTGGGAGATCTGTCTTACACTTTATTGGACAGTTGATGAGTAATACTTTCAACACTTAAAGTTGCTATTAACATTACtagtgatttttttatttatttattaaccgTTAGTCTCTTGCTAGTTGGTGGCCGTGCCTCCAATCGTTAGCCCCCCCGGGGCCTCCAGCAGCAATATGCTGTACAGGATCTGTTGGTTAGGGCCATATGTATTACTGGGTACCAGTGCGTCTGTGGGGTTTACAGTCTTGGTCAGGGCCTCCGTAGACTTGTTAACCGTGCCGAGGCCCGATGTGGGCGTTTTGTTTTTGGGATGACTGTCGTAGACGAGCTGTCCTCCACCTGCCAAAGAGCAACCGATTTAACAGTAGTACCTTGTGCACCTAGTTGCAGAAATGAGAATTTTTGTTGGTGGTGTCAGCTTCTTCAGTAAGCTGCATGAGATGGAAATATCACCACGGAGACCTCAAACTACATATCCTATAATGTTAAAGGCGTTTATGAACAATCTGTTGCCGGTGATTCTTTCTGTCGTACATTTTGTCTTCGAACGTATGGTAAAAATAGTCAAAGTAATGATGTATGTTATCATTTTCATGGTGATGGAAGTCCCTGTGTTACTTGCCTCTGAGGTCCATCCAAAGAATTGACTGAGGTAAAATCAACCTTTTGGAGGGTGATAACGCATCCCAGCACCTCTGCACTGTCTGCTGAATAATCTTTCATTTCGGTATCATCATTGGGGCTGTTCTGTACTCTTGTAAAACCCCTTTTATATGCATTTCTATTTATCTCTGGCGTTTTGATTTACAAATTCGAGCTACCCTTTTTATATGTAAATACTTGAGTTTGAGATCTCTGCCTCGATTGCTTGAGCTGTCTACAGACGTAGATTTAACTGTCAAACAAAGAAATGACCCGCGTGATCTAGACGATGCGCTGTATTGagtcttttttttaaaggcagtgaTTTTAGTCCTGGTCAGCTATTACCACTAATATTACTTTAGTTGTAGCTTCTTGTGAACCTATTTTCACAAACATTTTTAGTTTCCATTGAAACTTGTTCTTGGCAGCTTGGCTGTCGAGTTTGCATCATTTTAGTCATCTATTTTCCTGCTCTGCCCTTCAACTGACTTTAATCGAGTAATGTGCTTTTTATAGATGTTTTGTGTTCTTTACATGTACTCTTGATTACCCCCTTGCTTTTAATGTGTTACTGTATATAGCAAAACTTGCTTCACCAAATAATTGACAGGTCTACTCGTGAATCTATTTGTTAATAGTCACTAGTTGTGGTGCTGCTTGACCAAATTACATTTTGCTTTGGAGACACTGGTTCAAGAACATGAGTATGACCAGCAAAAACTGGTCTCTAAATTTGAACTTTATTTGCTCATCTCCAAAGACCCTGGAGATGGCGAGGATAATTGATAGATATGGTATTGTAGTACAGTAATAACTGTAGATAATAACTGTagatgtacagtgtgtatagctGTATTTTTATTAGTAGAATGCTGTATATTATACAAATGGATATGTTTTATAGTTGTGCTTCTTGGCATTACTTTTAACATCGTTTCTTGAGGGTTTGTTAGACATCTCCAAAAGAAACCGTTTCCTAAAAATGCCTACCACCTCAAAGATCCCACTGGCTGGTAAACCAAGACACAGGTTTTATCTTCGGTtttatatactgtaaatacactgcatgaccaaaagtatgtggacacctgctcgtcaatcATCTCagtccaaaatcatgggcattaatatggagttggtctccccccccccccccctgctgacataacagcctctactcttctgggaagggttTCCACCAGATGTTAGAACATAGCTGTGGGGatttgcttctattcagccatgagcattagtgagatcAGGCACTGACGTTTGGCAATTAGGCCttgctcgcagttggcgttccaattcatcccaaaggtgttcgatggagtttaGGGCAGGTctctttgcaggccagtcaagttcttccacaccgatctcgacaaaccatttctgtatggaactcgctttgtgcacgggtgcattgtcatgctgaaacaggaaagggccttccccagacTGTTGCcacagttggaagcacagaaccgtctagaatgtcattgtattctgtagcattaaggtttcccttcactggaactaaggggcctagcccaaaccagaAAAAATGCCcccgaccattattcctcctccaccaaactttacagttggctctATGCATTCAGGTAGccttattgtgctgacgttgctttcagaggcagtttgtaacCCTGTAGTGAGTGCAATCGAGAGCAGACTATTTTTACGGGCTTCAGCACTCACCGGTCCCGTTCTGTAAGCTTTTgttgcctaccacttcacggctgaggcGTTCCtgtagatgtttccacttcacaataacaacacttacagttgacccgggCAGCTCTaatggcagaaatttgacgaactgacttgttggacaggtggcatcctatgaaggtgccacgttgaaagtcactgagctcttcagtaaggccattctactgccaatcttTTGTCtgtagagattgcatggctgtgtgcttgatgtTATATGCCTGTCAGCAACGGGAGTGGCTATAATAGACAAAGCCACTatttttgaaggggtgtccacatacttttgtgtaatTGCCTGTATAAATGAGCTGTATTTTCATTGTTCTTTTCTAAATAAAATGGTTAATTATCAA

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13865 SLC7A3, ATRC3; solute carrier family 7 (cationic amino acid transporter), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1019696 lncRNA upstream 59863 48247229 ~ 48248088 (+) True G896226
TU1019680 lncRNA upstream 87302 48220368 ~ 48220649 (+) True G896212
TU1019678 lncRNA upstream 89544 48218050 ~ 48218407 (+) True G896210
TU1019649 lncRNA upstream 102598 48201242 ~ 48205353 (+) True LOC110534146
TU1019608 lncRNA upstream 148709 48154507 ~ 48159242 (+) True G896146
TU1020670 lncRNA downstream 180075 48501894 ~ 48503743 (+) True LOC110534159
TU1020674 lncRNA downstream 202707 48524526 ~ 48524766 (+) True G897121
TU1020720 lncRNA downstream 216723 48538542 ~ 48539048 (+) False G897165
TU1020721 lncRNA downstream 216723 48538542 ~ 48539153 (+) True G897165
TU1020764 lncRNA downstream 274532 48596351 ~ 48621973 (+) True G897207
XM_036933252.1 mRNA upstream 2831 48294185 ~ 48305120 (+) False LOC110534150
XM_021618857.2 mRNA upstream 2831 48294187 ~ 48305120 (+) False LOC110534150
XM_021618858.2 mRNA upstream 2831 48294187 ~ 48305120 (+) False LOC110534150
XM_021618855.2 mRNA upstream 2831 48294189 ~ 48305120 (+) True LOC110534150
XM_021618851.2 mRNA upstream 102577 48201385 ~ 48205374 (+) False LOC110534146
XM_021618862.2 mRNA downstream 11510 48333329 ~ 48336841 (+) True rab38c
XM_036933270.1 mRNA downstream 15690 48337509 ~ 48354802 (+) False LOC110534154
XM_036933259.1 mRNA downstream 15691 48337510 ~ 48354802 (+) False LOC110534154
XM_036933263.1 mRNA downstream 15691 48337510 ~ 48354802 (+) False LOC110534154
XM_036933268.1 mRNA downstream 15692 48337511 ~ 48354802 (+) False LOC110534154
TU1019687 other upstream 72335 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 396976 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1090880 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1103109 47203246 ~ 47204842 (+) True G895652
TU1019023 other upstream 1103327 47203246 ~ 47204624 (+) False G895652
TU1020802 other downstream 354438 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 955883 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 1108580 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 1713171 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 4128399 52450218 ~ 52475365 (+) True G901849

Expression Profile