RNA id: XM_036933269.1


Basic Information

Item Value
RNA id XM_036933269.1
length 5339
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC110534154
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48337509 ~ 48354802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCAACCCCTTTCTAAGTCACCTGATTCATAGGCTACACTGCCATTTTACACATGAAGTTtaagtgagaaaaaaaatgaataatcGACTacctaacaaaaaaaaaaacatttgtaaaaagaTTAAATGCATTCAGAATAAACCATATGGAGCACGTCAATTAAAGGACATGGAAAAACGAGGAGGAGTCACTGCTACAAGACCTCGACACGAACAGAGGGGAGCTTGAGAGAAAATACATTCATATGCTATTTTGTAACGTCTTCAAAATTAGTCTAGCCCCAATCATAACCAGAGAGAACGTCGCGTGATCACCGACCGAGGATTGGACAGTCTATCACGGATCGGATCGCTGCGGCTCAGCACAGCATGACCGGATCCGCTATAAGCAAAGCCGTCTGCAAGGCCACGACGCATGAAGTCAGCGGACCCAAGAAGAAACACCTTGACTACCTGATCCACTGCACCAACGAGCTGAACGTGAGTGTCCCCCACCTGGCTGACACGTTGTTTGAGAGGACGGCCAACAACAGCTGGGTGGTGGTGTTCAAGGCCCTCGTCACCACGCACCACCTCATGATGTATGGCAACGAGCGATTAATCCAGTATCTGGCGTCCAGAAACACACTTTTTAACCTGAACAACTTCTTGGATAAGGGAGCATTACAAGGTTATGCCATGTCAACGTTCATCAGACGCTACAGCAGGTATCTGAATGAGAAGGCCATGTCCTACAGACTGGTGGCTGTGGACTTCACCAAGATGAAGAGAGGGGTCGACGGTGTGATGCGCACCATGACGGTTGAGAAGCTGATCAAGACTCTACCGATCATTCAGAATCAGCTGGATGCACTGCTGGACTTTCAGGCTAACTCTAACGAACTGACCAATGGCGTCATCAACAGCGCCTTCATGCTGCTCTTCAAAGACTCCATCCGCCTCTTTGCCGCGTACAATGAAGGAGTCATCAACATGCTGGAGAAATATTTTGATATGAAGAAGAACCAATGCAAAGACGCCCTGGAGATTTATAAGACGTTTCTGAACAGAATGACCAAGCTGTCAGAGTTTCTCAAAGTTGCAGAGCAAGTTGGAATTGATCAGGGTGACATCCCCGATCTCACACAGgccccTAGCAGCCTCCTGGAAGCTTTGGAGCAGCATTTGGCCTCTCTGGAGGGGAGGAAAATCAAGGAGCTCTCCACAGCCACCAGAGCTAACACCTTGTCCAGTGCTGTGTCGTCACTGTCCAGCACTGGAATCTCCCTCAGCCGCATGGACGAGAAGGAGGACGAGAACAGGCTCAAGGACGAGGGAGCCAAGGTGATTGACGTGCAGACGCCGACCGTCTCTCCCAGCTCCCAGTCAGTGGGCAGTGCCAACGGCAGCAGTGGGGTCACAGACCTCTTCTCCAACTCATCTGTTGTATCTGTTACAAATAACGTGCCAAATCTCACCAGTGACTTGTTCAACCTCCAGCCCACCTTCAACCCGAATATCCAGACCACACACACTGTGCCGTCTAACAACAACGCCTGGGGAGGTTTGGGGCTCCCAGGGGACCTGTTGAAGCCAGCTCAGCCCACACACATCCACAGCCCTGGGATACCACTGCAATCTGGGGGGAAGATGATGCCCACTGACCTGGACTCCTCCTTAGCCAACCTTGTTGGCAACTTGCAGTTCGGAGGAACACCAGCCAAAAAGCCAGAGCCCCAGTGGGCCCAGCTGGTAGAGAAGAAGCCCACAGGAGGGACTCACTGGCAGTCCAAAACCATGTGCACCAGCCCCAACTGGAACCATCATACCCCCATGGCTCCTCAACCTATACCCATACCACAAATGAATGGAATGATCTATACTGGCTATGCTCCGGCTCCAGTGGCTTTTCCTATGACGACACCTCAAGTGCCTGTTTATGGAATGgagaTGCCTCCTCATCAGATGGGGCAGATGGGTGGAGTCCCTATGATGGCACCACAGCATATGATGTACAACCAACCTGTCCTTCGGCATACCAACCCATTCGCTCCCATGCCAGGAGCCCAGGCTTATTTTCCTATGCAGATGCACTTCATGTAGGACTGGGAGCATCTTACCATGACAGTAAAAGCAGAGAGACGAACCAATCCAGAACCAAATGCAACGCGAGGTGGAAGAGAGAAAGGAGCGGAAGACGGTGGTGGAGACAGACCGGTGACGTGGTGGTGGAGACAGACCGGTGATGTGTTGGTGTCGGTGCTCTTTCAGTGGCCTCCCTGTGGGATGGAACCTCTGTTACATTCTGCATCATGGCTGATATAAGAGTCCCATCCAAGTCCTTTGACAAGTCACAGCTCACATTCATTCTGTATTTGATTTGCTCATTTGAATGGGTATCGTTCCGACCTGTTTGAACCCATGCTATGGCGACAGCTGCATTCCAGTTTGGAGCTTGGCCCCTTTGCAGTGAATTCTAGACAACTGCCATCACCCCCCTCATCCGTCAGTGTCAATGGACATCTCTTTCTCTGATAGTTTGCACGCACTTTAATCAAATGTGAACTTTGCCACGGGTGTACATACGCATTGTCCAATTAGGGTCTCATACAAACCACTACAACACTCCTACGTCTTTTCTCCCCAATGTTCATGTCAGAGTTGCGGTAGCTACCGTTTTCATGCGTTTCAATCGATGTTCACCAAACATTTTGGAGTCGACTCCGTATTCAttccattttttgttgttgtttcacaACCAGTTATAGTATTGGATAAATGGCTTGGAGACACATGGTTTGTGTACGCgtgtgcatgtacagtatatctgtctgtgttCATTTGCGGTGCACTCTGATCTAAATGTACAACCGCTATTGTGTCATGTTTTCTTCGGTTCCTGTGAAAGCCATGATCTGCGTGGCGAGGGCTGCCCACTGTACTCTTGTTTTTAAACGGTGTGCTCCATGCCAACATAGACCTACGGTGTACTCCTATGAAAGAAGTGAAGGCGGCCCACTCATTTCATACGGAACCGTCGTAGGTCATGACACGTTCTGCCTCTGCCGTGCCACCCGTTGTTCGCTCTGCTCGGTGCTATTtgaggttgttttttttttaaatacgtgATCCATGTTCCTTTAGCTACCACAACGGAGCATGGAACTTCCCGCCATCGGATTTAGCTTCTGCTCTTTGAAACCGATAAcggacctgccccccccccccccccccccccccccatgtcagtGAGTAAACGTTGGGAGAGTGTTCTTTGTGTTTTCTTCTCGTATCGCTCCAGGTCGATGCCCAATGAGTTGTCGCATGTGTCATTGTTGTGTTTCTGAGTGGCAGTGTGTTTGCGGTGTAGCTCCCCACCAACCCCTGGAGAATGTTGTTGAGGAGCTCGTTTCTGAGAGACTGCTTCGCGAGACAGTGAAACTGACAATCGCTCCAGTAAGTCAGCAACTATCTGCCACGCTCCAACTCCAGCCCCAGAGATAGCCCTAGCTTGCTGTCctggacatttttttttgtttgccGGAGGGCAGAGGACAAGTGAGGAGGAAAGTAGAGAGATCTGTAAATGTGATCGAGGGTCATGTCTGTCCAGAAACTCCCCGGTGTGCGTAAcggtgacagacagacaacatataTAGCACAAACCCTGGAGGGGGGCGAGCGTTTTACTGCACAAAACTAAAACCATTGCTGGGATGTACAGTCAAAGGGGCTGGGGGAAATACTTGTTTTTCTATTTATTGTGTTTCTATATGTCCATGCCCTTCCCGGTGAGATAAACAGGGTAGTGTTCCTCAACGAGGCCTCCCAGCTTCTGGTCCTCCGAGGACAGTGGGGGTCACTGAAGCCATCCAGGCCATCTGGTAGTGTCTATTTAGCCATGAGTAGTCGAGTGTCGTAACGTGTCTCAATACAAGTCGGTCGTCTGTTAGATTTGCTGTAGAGCCTCTCATTCTGCTAATCATGGGCTCTGTCAAGACTACCGCATTCCGACGCCCTGTGACCGGCTTACATTTTGTAGATGTTCTTTGAAACGTAATTCTGTCTCAATGTCACCTGTGTCAATTGAATGCTTTTATGCAAGTTCACGCAGTCCCATAGACCAATTCTGACTGTTACGCTGTCCTCTGTATGTAACCTTGTATGTTTTTAGACATGTGCTCGCTCTGTAAGTGATGGCCCCATTGGGAGACGGGGGTTGTTTTATTGCCGTGTCTGTGGTGCGGGTCATTGTGCTTGGCGGTGGTCATGGGGTGTACGTCTGTGATGTTTTGTGTATATCTTGATGGGTGGGGGGTGTTAGGTTCAACAGTATCACAACTGGTCTACCAAGAGTGTCTTCATTGTGGCAGTGGACACTGTCCTCTCCGTAACAGGAACATTTTGCACCAAAGTCATCAAGCGCAGCTTTTTCTCCGCGGTCACATTGCTGATATCCAATTTTGGAGGAATTTGATTTCAGCGACAAGTCTCTTCTTGCATGATTAGTGTTGTCTTTTTCTATTGACTTGTGTGCCCGGTAAAGAGCATGATCATATGTGAAATTTCACTTACCGGTGTGTTTGCAAATGTTTAGGAATTTCTCTTGACTTGCCTCTTTTACATTAGCGTTCATAAATGTGTGTGTCCTACCAGATAtaactgtctttttttttttttttttgcatttgaaATGCAATTCAAAGCTCCTATCAAATACCTATTCAGTTACGAGACCACACATTTTGTGAAACATGAATATAAATGCTATGCATCACCTAGCTAGCTAGACATTCAAGTCCTGTAAACCCCTCCTTGTTAAAACGTTgctattttcaatacatttgttgAGCGCTTGCTCTTTTTTTCTTCCGAGTTTTTGGGTTTCTCCTAGTATGTTCAGTCTTGTCCCTCTTCCATTGGATCACGTCATTCTCTGCCAATATTGGTCATCTTCCTTTGCGCTTGCAGTGGAAAATCTCGCTCCCTGATCTTTTAGCCACTGAAAGATGTCAACGTGCATTGTCACTTTGCCCGATGTACTCTGGCGATGTATAATGTACATTTATGCATATTTAACAATATGAGCACAGTATACCTGTGTTCGACTCCATATTGCCCatctgaaaacatttttttttctttctccccTGTGATGAAACGAAGCATTGTCCAGGATGTCCTGTTTTTGGAAGTGAGGCTCCataccttttttgttgttgttgagtacATCAAATGGATTGATAACACAATACACTGTATTGTCAATGCTAAATTACATTGTTATAAACAATTGTTTTTTCTTTTAAATGCAGAGGTTGTTGTTTTTTGGAAGACAATTGAATAAAATGTCATATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1019696 lncRNA upstream 89423 48247229 ~ 48248088 (+) True G896226
TU1019680 lncRNA upstream 116862 48220368 ~ 48220649 (+) True G896212
TU1019678 lncRNA upstream 119104 48218050 ~ 48218407 (+) True G896210
TU1019649 lncRNA upstream 132158 48201242 ~ 48205353 (+) True LOC110534146
TU1019608 lncRNA upstream 178269 48154507 ~ 48159242 (+) True G896146
TU1020670 lncRNA downstream 147092 48501894 ~ 48503743 (+) True LOC110534159
TU1020674 lncRNA downstream 169724 48524526 ~ 48524766 (+) True G897121
TU1020720 lncRNA downstream 183740 48538542 ~ 48539048 (+) False G897165
TU1020721 lncRNA downstream 183740 48538542 ~ 48539153 (+) True G897165
TU1020764 lncRNA downstream 241549 48596351 ~ 48621973 (+) True G897207
XM_021618862.2 mRNA upstream 670 48333329 ~ 48336841 (+) True rab38c
XM_036933253.1 mRNA upstream 15692 48307951 ~ 48321819 (+) True LOC110534152
XM_021618857.2 mRNA upstream 32391 48294187 ~ 48305120 (+) False LOC110534150
XM_021618863.2 mRNA downstream 41078 48395880 ~ 48413217 (+) True LOC110534157
XM_021618865.2 mRNA downstream 129386 48484188 ~ 48488509 (+) True LOC110534160
XM_021618864.2 mRNA downstream 135461 48490263 ~ 48502650 (+) False LOC110534159
XM_036933272.1 mRNA downstream 158320 48513122 ~ 48524465 (+) False LOC110534162
XM_036933274.1 mRNA downstream 158320 48513122 ~ 48524465 (+) False LOC110534162
TU1019687 other upstream 101895 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 426536 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1120440 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1132669 47203246 ~ 47204842 (+) True G895652
TU1019023 other upstream 1132887 47203246 ~ 47204624 (+) False G895652
TU1020802 other downstream 321455 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 922900 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 1075597 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 1680188 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 4095416 52450218 ~ 52475365 (+) True G901849

Expression Profile