RNA id: XM_021618865.2


Basic Information

Item Value
RNA id XM_021618865.2
length 1815
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110534160
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48484188 ~ 48488509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAACCTATTGCCGACTGGGGGCTTTGTCTAATTCATCATTAACCAGGGTCTTACAAACTTCTGGGAATTGGTCAAAGCTGTAGTGATAGTTGAGTTCAACCATTGGGATAACAATTATCGTGTCAAGAAATGGGACTAACTCAGAAATGTTTCGGTTTCTTTTGCAGATTTGGTATAAAATAATCATAATAAACAACAGGAACATCCAAGGACACGAAGAACTTAACCTCCAGTCTGCCATTGACATCGCATAAATATTTGTTGGGCTCCCTAGTGGTGCCTTGGAACACAGGTGATGGCTGAGCACAGCAGCAACCCTGCTTGGAGGGTCCAGGCTGGCTCCACCCTAGCCTCGCTCAGTGACAGGATGACTCTGCCAGAGAGCACTACCGTTCTCTTTAATCTGAGTTTCCCAATGGAATGGAATCAGTCTGACACCAGACCAGAGACACCTGACAATGATAAGAACTGGCCTGCTCTGCTCATTTTGCTGGTCATCTTCTTCACTGTGGCAGGCAACATCCTGCTCATCTTGGCTGTGTCTCTGGAGAGGAAGCTGCAGAATGCCACCAGCTTCATCCTGCGCTCCCTGGCTGTGGCAGACATGCTCGTGGGCTTTCTCGTCATGCCGGTCTCACTGATTAACATTCTCTATGACTACCTGTGGCCCTTCCCCAGACCCCTTTGTCCCATCTGGATCTATCTAGACGTGCTGTTCTCCACAGCATCCATCATGCACCTGTGTACCATTTCACTGGACCGCTATGTGGGCATCTGTAACCCCATCAAACACAGCCGCTCCAACTCCCTCTCCAAAGCCAAGGCTAAGATCGCCCTCGTCTGGAGCATCTCCATAGtgaTCTCCATGCCCATCCCTGTGATTGGCCTGTATGATGAGGGGAAGGTGTTTGTCAATGGGATCTGTGTACTGAACGAGCACAGCTTCGTCCTGATTGGCTCCTTCGTAGCCTTCTTCGTCCCTCTGGTCGTCATGGTGGTCAGCTACTGTTTGACCGTGCGCGTGCTGCAGTGCCAAGCCTCTGATTACCTGCACGGAGGCATGGCTTCGATCGACCGGCCTACCTTACTCGGGATCACCCCAAGGCTCCCCGCAGGGGACAGTCTTAGCCTCCTCAAACAGGACCCTAGTCCCGAAACCTTCAATATTTCCGTCTCTCAAGCCTCCTCGCAACCCGTCTCTCCAGCAGGGAGGCAGGAGCCAGGGGGACCTGGTGGGAAACCTGGCGTGGCTCAATCAATCAAAAATGAGAGGAGAGCCTCCAAGGTCCTGGGTGTGGTGTTTTTCCTCTTCCTGATGATGTGGTGTCCGTTCTTCATCACCAATGTGCTAAGCGTGTTGTGTGAGGACTCGATAATAAGCATGTGCAATAAGCCCGTGTTGGCAGTGCTCCTAAATGTCTTCGTTTGGGTGGGATATGCCTCTTCTGGTGTCAACCCACTGGTCTACACTCTATTCAACAGGACCTACAGACAGGCCTTCCACCGCTACCTACGGTGTATCTACCACAGCCCGCCAGCCAAGAGCACCCCAACCTACCCTGTCTTTCCTGTTTACACCGTCACCCCTATTCTCTGCGGGAAAGATGCCAGCCGGCTGTAACTGTAGCAGACACAATGGGATTAATGGGGTGTGTTAATGGCAGAATGAGGTTGGAGAGAGTGTaaaaaaaaagttctgggacgtTAGAGAAGTTGGTCAGCGTCCGTCCCACCCCCCGCTGAGCACGTCAGCTGTGTCTGAACTAGCTAGCTGGcctccaggctctctctctctcactctctctctctctctc

Function

GO: NA

KEGG:

id description
K04157 HTR2; 5-hydroxytryptamine receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1019696 lncRNA upstream 236100 48247229 ~ 48248088 (+) True G896226
TU1019680 lncRNA upstream 263539 48220368 ~ 48220649 (+) True G896212
TU1019678 lncRNA upstream 265781 48218050 ~ 48218407 (+) True G896210
TU1019649 lncRNA upstream 278835 48201242 ~ 48205353 (+) True LOC110534146
TU1019608 lncRNA upstream 324946 48154507 ~ 48159242 (+) True G896146
TU1020670 lncRNA downstream 13385 48501894 ~ 48503743 (+) True LOC110534159
TU1020674 lncRNA downstream 36017 48524526 ~ 48524766 (+) True G897121
TU1020720 lncRNA downstream 50033 48538542 ~ 48539048 (+) False G897165
TU1020721 lncRNA downstream 50033 48538542 ~ 48539153 (+) True G897165
TU1020764 lncRNA downstream 107842 48596351 ~ 48621973 (+) True G897207
XM_021618863.2 mRNA upstream 70971 48395880 ~ 48413217 (+) True LOC110534157
XM_036933262.1 mRNA upstream 129386 48337512 ~ 48354802 (+) False LOC110534154
XM_021618864.2 mRNA downstream 1754 48490263 ~ 48502650 (+) False LOC110534159
XM_036933272.1 mRNA downstream 24613 48513122 ~ 48524465 (+) False LOC110534162
XM_036933274.1 mRNA downstream 24613 48513122 ~ 48524465 (+) False LOC110534162
XM_036933275.1 mRNA downstream 24613 48513122 ~ 48524465 (+) False LOC110534162
XM_036933276.1 mRNA downstream 24613 48513122 ~ 48524465 (+) True LOC110534162
TU1019687 other upstream 248572 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 573213 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1267117 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1279346 47203246 ~ 47204842 (+) True G895652
TU1019023 other upstream 1279564 47203246 ~ 47204624 (+) False G895652
TU1020802 other downstream 187748 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 789193 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 941890 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 1546481 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 3961709 52450218 ~ 52475365 (+) True G901849

Expression Profile