RNA id: XM_036933272.1


Basic Information

Item Value
RNA id XM_036933272.1
length 3420
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC110534162
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48513122 ~ 48524465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGTCATATTGGGACATATGTGACAAGAGTGGGGGTTACAGCCAGGTTTAGAGAGACAACTCACCATCTCATTCAGCAGCTTGAGGATGCTGATTGTGAGCTCCTTTCCTGCATGTAAAAAGGATTCACATTGACTCGGATCAAGAAACAATTGGCACAGCAGAGCTGTCTCGCATCTGAAGGGACGTTCCTGAGCGAGCAGCCACTCATGACGTGAACTTCTAAACACACCCattgagataaaaaaataaaaaaaataaaaaaacactgaGGTGATTcatcCGACGAACTCAGAGCAAGCAGCAGCCCACTTCCAATTGTCATGGCAACAGCATGTGAATGCATTGGGCCATAGGTGCAGACTGTAGAGTGGATGTAGGAGTGCGGCATCGGAAGCCACAGCTCTATCTCCTGAAGCAGGCTGTAAGCTGAATGAAAAGTGAAACCCTGTTCTCTAAAGAGGAGCCATCTCTGCTCAGCCAATCAGCCTGTGATCTGCCTGGTCTCTCAGGAAAGTCTCTGATGCCATGGAGCACAAGGCCCTGATGTATACCAGTCAACCCTGGAAGGGGCCCAAGGGCTCCACCTTCACCCCCAACTGGGACACCCCATCATGCCGACCAACCGTCACATCCCTTTGCCCTGACGTGGTAAAGTCCCCGTGTCAACATGCTGCCAACATATGTCACCCTTCAGAAGTCCCTGTGACCTCCCAGTCCCAGCAGATTGGCCCCCACGCTTCAACATCCTCTGGGTTTTCTGCCACCTCCAACACTGCCAGTAGAAAAGGTGAAAAGGAGTGTAATATAGTCATCCCCATTCAAAATGAGGAGACGGCCCTGCCAGCATACAACCCTGGGTTTCGCGGACGCTCCTTCTCCGCAGCCACTGCCTCACACCCAGTCCCACCCAGACGCAGATGTGACAGCTACGTCCACCTATGCCCCGACAACGGCTCAGAGGACACTAGCAGAGGCGACGCCTCCCAGTTGAGCCCAGACGTCTCCCCTGATCATGGTGGTCCACGGTCGCGGTCCCGCAGCATCATCCTGAGGAAGACAAAGAGGAGGCCGGCGCCGCCAACCCGTAGCGTGTCCCTCAGGAGAGAATCTGCCACCAAGCTCAGGGACAACAGGACTAAGAGCCTTTATATCGACAGGGACCCTGGCCCCCATGACTCCTTCCTGCCTGACCTCATCCTCATCTCCACTCCGAGGACAGAGGAGGTGATGTGCCTGGAGCAGTCCCCTGCTCAGCCTGTACAGGCCCGGGTTGGGCCACCAGTCAACGACAATGGGCAGCTATGTGAAGAAAGGTCTATTGAGCCCTGCTGTCTCATGTCAAGCTCAGGTCCTGCTATGGGTGTACCTGTAAATGAGGGAAGAAAAGCCTCCAGCAGGTCAGAATCGGTCAGACCCCTTCCCCCCTTGCAACGCCCGCAGTCTCTAACTTGTAAGCAGTCCCCCTTCCAACAACctgcctcagtctctccctccagTGGCCAGTCCAGCTCTCAGTGTGAGACTCGTTCCCCTCCTGTCCTCACATCTGCCATCACGGGACCCTCCCCCTTGGGCTGCAGGATGCGCCCCAAGTCCTCCACCTCGCCCACCTCCCCCAGATCCAGCAGGCTGCGGCTATCCTTGGAGTTGCCAGGGGTCGTCCCTCTCCCAGACCCGGCGGTGATCAAACCCAAAGCTCCCCGGCGACACTCAGAGTCCTCTGGGTCGTCTGGCACCACCAGACCCAGACAGAGGCTGAGCTCCAGCATGATGGTGATGCCTGTGGTGACCCAGGAGGATCTCAGCAATGTGCGTTTGCGTTCCGTCAGCAGCTCAGACTCTGACAAAGGCCTGGAGGGCTCACCTGAAGTCATCAGGGAGGAGGAGCTGGAACAGGAGCTGGAGTTGGAGAGCTGCCCACTGGTCCACCACAGTCCTAAAGCTAAACCACCTGTTGCTGCTAAGCCACCTGCACACAAATGGCCACCGATACATTTGGTAAAGTCTTCCTCAGTCTCTACTCATTTCTCAGAGACCGTTCCAGCCTCACCAAGAGAGAGCCAGGGGGACATGTATATGGTGGAAAGGAGACCAAAACCTAAAAGGTCGCACCAGCTTCCTCGTGTTGCCAGTGATGGGGTTATGGTTGAGAGGCAGCAAGCTGTAGACAGGCAACAATATGATGACCCACACCCACCACCCGCCTCCTGCCATTCAGAGAACAAGGATGTGAGAAGGACCTCTCCCACCAGGACCTCATTTCTCCTAGCTGAACTGGATAGGAAGAAGAAGATGGTTCCCCCTCCAGTCGCAAAGAAACCGGATGTCCTCTTCATGTCCTCCATCAGCTCACTGGGACAGAAGAGTAATAGGAGCCATGTCTGGTCTGGGCCCAGTGGTGCTTACCAGTCTCCTGCCAGTGCATACCAGTCTCCTGCCAGTGATTACCAGTCTCCTGCCAGTGATTACCAGTCTCCTGCCAGTGCATACCAGTCTCCTGCCAGTGCATACCAGTCTCCTGCCACTGCATACCAGTCTCCTGCCAGTGATTACCAGTCTCCTGCCACTGCATACCAGTCTCCTGCCAGTGATTACCAGTCTCCTGCCACTGCATACCAGTCTCCTGCCACTGCATACCAGTCTCCTGCCACTGCATACAAGTCTCCTGCCACTGCATACCAGTCTCCTGCCAGTGCATACCAGTCTCCTGCCAGTGCATATCCGTCTCCTGCCAGTGCATACCAGTCTCCTGCCAGTGCATACCAGTCTCCTGCCACTGCATACCAGTCTCCTGCCAGTGCATACCAGTCTCCTACCACTGCATACCAGTCTCCTGCCAGTGCATACCAGTCTCCTGCCAGTGCATACCAGTCTCCTGCCAGTGCATACCAGTCTCCTGCCAGTGCATACCGAGACAAAGACTTTACTGGACAAGATCTCAACCATCACAGTATAAGAGATGGGTTCGTCCTAGATGAGAACTGTGAAGAGAGGAGGGCAATGCCTCAGATGAGAACACTGTGCCtcggggaggaagaggaggaagagttggAGCGCAACTCACAGTCAACTACTGAGGACCTATTCACCATCATACACAGGTCCAAGAAGAAACTCCTGGGTCGCAAAGAAACAGCTGACAGCAGGCAAGGTTACGGATCCCCCATTAAAGGCATCCAGGGGGTTGGCCAGAAGTCCAGCTCCAAAAATGACAACTTCATGGCTTTTCTGCAGAGGCGGAGGAGCAATAAACCCAACTCTGGGGAGAGACTGTCAGCCGCTGAACTGCTGAAGAGTACCAAACCACTGGTCGGTCAGCCATAGAGCATCAAACAACTCCAATGTTTATGTTTCTCAATGTGTTGCAAACACTTATCACTCAATATGGGGCATGAGGGTATTGTGGACAATcaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1020670 lncRNA upstream 9379 48501894 ~ 48503743 (+) True LOC110534159
TU1019696 lncRNA upstream 265034 48247229 ~ 48248088 (+) True G896226
TU1019680 lncRNA upstream 292473 48220368 ~ 48220649 (+) True G896212
TU1019678 lncRNA upstream 294715 48218050 ~ 48218407 (+) True G896210
TU1019649 lncRNA upstream 307769 48201242 ~ 48205353 (+) True LOC110534146
TU1020674 lncRNA downstream 61 48524526 ~ 48524766 (+) True G897121
TU1020720 lncRNA downstream 14077 48538542 ~ 48539048 (+) False G897165
TU1020721 lncRNA downstream 14077 48538542 ~ 48539153 (+) True G897165
TU1020764 lncRNA downstream 71886 48596351 ~ 48621973 (+) True G897207
TU1020795 lncRNA downstream 142311 48666776 ~ 48668107 (+) True G897237
XM_021618864.2 mRNA upstream 10472 48490263 ~ 48502650 (+) False LOC110534159
XM_021618865.2 mRNA upstream 24613 48484188 ~ 48488509 (+) True LOC110534160
XM_021618863.2 mRNA upstream 99905 48395880 ~ 48413217 (+) True LOC110534157
XM_036933261.1 mRNA upstream 158320 48337513 ~ 48354802 (+) False LOC110534154
LOC110533135 mRNA downstream 5354 48529819 ~ 48532846 (+) True LOC110533135
XM_021618870.2 mRNA downstream 20753 48545218 ~ 48549943 (+) True LOC110534164
XM_021618871.2 mRNA downstream 25619 48550084 ~ 48551178 (+) True LOC110534165
XR_005034165.1 mRNA downstream 43111 48567576 ~ 48568413 (+) True LOC118936701
XM_021618872.2 mRNA downstream 62821 48587286 ~ 48624401 (+) True LOC110534166
TU1019687 other upstream 277506 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 602147 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1296051 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1308280 47203246 ~ 47204842 (+) True G895652
TU1019023 other upstream 1308498 47203246 ~ 47204624 (+) False G895652
TU1020802 other downstream 151792 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 753237 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 905934 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 1510525 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 3925753 52450218 ~ 52475365 (+) True G901849

Expression Profile