RNA id: XM_021618872.2


Basic Information

Item Value
RNA id XM_021618872.2
length 4958
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110534166
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48587286 ~ 48624401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGAGCTGGCAGTGTTGACAAcgcagcgagagacagagaggggttgGAGAAGGGCACCCGCCGCCGCCACCGTGACTACACTCCGTTCGACACCATGACAACCGTAGCAAATGCACGGCGAGCCCCCGGCCCTGCTGCCCCACCAatcagaggggagagagtggcgCGCGGCAAGCTGTGAGGGGAGAGACGCAGCACAGGATAGCAGAGCAGAGGTAGAACACCCCAGACACTCCTACTTACACAGAGAGAAGATACCCAGTCATTTCTCTGCCTCTTACCTGAACACTGGATGCCAGAGAGAACCTCTTGGATAATCAGCTTTGCTCTTGTTCTTTTCCCCCACAGTGGGGAGGAGTGTAAGGATGGATATACTGATTCTAACAGGACCACCCAATCACTATTACAACCTAGGAGTTACCAgactggtggggggggggaaacGCAAAGAAAAAGACCATGTCGAAAATCTGCATCAGATTCCAATTCCCCAGTAGGCCGTGAGTGACGCCGACCGTGTGCACATGATGAATCCCATGGCCCAGCTGTACTACAAGAAGGCGAGCTACTCGCCGTACCGCGACCGCATCCCGCTGCAGATCGTGCGGGCGGAAGCGGAGCTGTCAGCGGAGGAGCGGGCGTACCTGACGGCGGTTGAGAAGGGTGACTATGCCGGGGTGAAGCTGGCCCTGCAGGAGGCGGAGATCTACTACAACATCAACGTGAACTGCCTGGACCCGCTGGGGCGCAGCGCGCTGCTCATTGCCATCGAGAACGAGAACCTGGAGGTGATGGAGCTGCTGCTCAACCACGGCGTGCACGTGGGCGACGCACTGCTCTACGCCATCCGCAAGGAGGTGGTGGGCGCCGTGGAGCTGCTGCTGTCCCATCGCAGGTCCAGCAGAGAGAAACAGGTGCCCAACCTGATGATGGATACCCAGTTCTCAGAGTTTACCCCTGACATCACACCCATCATGCTGGCAGCTCACACCAACAACTATGAGATCATCAAGCTGCTGGTCCAGCGCAAGGTGACCATCCCCCGGCCCCACCAGATCCGCTGCGACTGCGTGGCCTGTGTGTCCAGCTCCGAGGTGGACAGCCTGCGTCACTCACGCTCCCGCCTCAACGTCTACAAGACCCTGGCCAGCCCATCCCTCATCGCCCTGTCCAGCGAAGACCCCATCCTGACTGCCTTCCGCCTGGGCTGGGAGCTGAAGGAGCTAAGCAAGGTGGAGAACGAGTTCCGTCAGGAGTACGAGGAGCTGTCCCAGCAGTGTAAGCTGTTTGCCAAGGACCTGCTGGACCAGGCCAGGAGCTCTAGAGAGCTGGAGACCATCCTCAACCACCGCGATGACCTCAGTGATGAGCTAGACCCACAGGACTGCCGTGACCTGGCCAAGCTCAAACTAGCTATCAAGTACCACCAGAAAGAGtTTGTGTCCCAGCCAAACTGTCAGCAGCTTCTGGCCACCCTGTGGTACGACGGTTTCCCCGGGTGGCGCAGACGCCACTGGGCGGTCAAGCTGGTCACCTGCTTCACCATCGGCCTGCTCTTCCCCATCTTCTCCCTGGTCTACCTGCTGGCTCCTAGGAGTGCCCTGGGCCTCTTCATCAAGAAGCCCTTCATCAAGTTCATCTGCCACACAGCCTCCTACCTGACttttcttttcctcctcctcctggcctCCCAGCACATTGTGAGAACAGACCTGCACGTCCAGGGCCCGCCACCCACCGTGGTGGAGTGGATGATCCTTCCCTGGGTGCTGGGCTTCATCTGGGCTGAGATAAAGGAGATGTGGGACGGCGGCTTCACTGAGTACGTCCATGACTGGTGGAACCTGATGGACTTTGCCATGAACTCTCTCTACTTGGCCACCATCTCACTCAAAATAGTTGCTTACTTCAAGTACAACAGCTCTCGGCCGCGGGAGGAGTGGGAGATGTGGCACCCGACGCTGATCGCCGAGGGCCTGTTTGCTATCGCCAACATCTTCAGCTCCCTGCGCCTCATCTCCCTGTTCACAGCCAACTCCCACCTGGGGCCTCTGCAGATCTCCCTGGGACGCATGTTGCTGGACATCCTCAAGTTCCTCTTCATCTACTGCCTGGTGCTGCTGGCCTTCGCCAACGGGCTCAACCAGCTGTACTTCTACTACGAGACCAAGGCCTCGGACGAGCCCAACAACTGCAAGGGCATCCGCTGTGAGAAGCAGAACAACGCCTTCTCTACGCTGTTTGAGACGTTACAGTCCCTGTTCTGGTCGATATTCGGCCTGCTCAACCTGTACGTGACCAACGTGAAGGCACGCCATGAGTTCACAGAGTTTGTGGGAGCCACCATGTTCGGTACCTACAACGTTATCTCCCTGGTGGTGCTGCTCAACATGCTCATCGCCATGATGAACAACTCCTATCAGCTCATCGCTGATCATGCGGACATTGAATGGAAGTTTGCCCGCACCAAGCTGTGGATGAGTTATTTTGACGAGGGAGGAACTCTCCCTCCGCCCTTCAACATCGTCCCCAGCCCCAAGTCAGTGTGGTACCTGTGTGTGTGGACGCACAACCGCCTGTGTGGACGGGACCATCCCAGTCCTGACAACCCGAGGAAACAGGAGAACTTAAAGGAGTTCACGGAGCGGCATGCTGACAACCTGATTCAGAACCAGCATTATCAGGAGGTGATCAGGAACCTGGTGAAGAGGTATGTAGCAGCCATGATCCGCAGTGCTAAGACAGACGAGGGTCTGACAGAGGAGAATTTTAAGGAGCTCAAGCAGGACATCTCCAGTTTCCGCTACGAGGTGTTAGACCTGTTGGGGGACAGGAAGCCTCCGCGGAGGACCTACTCATCCAGCAGTGAGGCTACCCAGCAGGACGAGGCCAACGAGGAAGAAGGGGCTGGACAGGCCCAGGGTCAGTCCAGGGACCAAGGGGCTAAGGGGGTATCCTTCAGCACGTCTATCGCTGAGAGGAAGAGCAAGGACTCTGGGTTCAGCGTCTCCGCCCTCTTTAAGTCCATGTCAGGGGCAGAGGGGGCAGTGGACAACAAACCAAAGTGCAACGGGCTCAggttctcttcctcccccccgcCCACTGCTGCGTTAACCCGCAGTAGTGGCCGGCTGCAACGCTTCTCCAAGTCCAAAAGAGACTCCATCAGGCGGCTGGGCCTGCTCTTCTCCCGCATGAACGGACACGTCCCAGAGCCCATGTCCCCTCCTCCCAGGATGCACCAGCCCACCTACAGCATCTCAGGCGGTCTTCTTCGGCAGCCCACAACCTGGCCggacatccagatcccccccaaTCCCCCGGTTACACACAGCCTGTTCCACCTGGGGGTGAACCTGAACGAGCTACCACATGCCCCTCCCCAGGCCCTGCCATTGGGGTCACCCCAGCAGGCTAACGGAAGTGACAGTCTTCTCCTGCGACCCGCGGGCCACTCCTTACCACCGCCAGCCCACTCCCTGCCACCCCTGCACTGTGCTTCCAGCATCACGGCCTCCAGCTCCCGGGCTGTCCTCTTGGGCTCTAGTGAGGACATGTTTGAGGGCTGGATAGGACCTTGTGACGAGCTGGACTCCTCTGAGGGGGGGGCTGAGCAGGAGGactccatcacaacacagctttAGAGATCCCTCCCCCCAGGAATAATGACAGTATGTTCAGGTCACTCTGCTGAAAGGACAGAAAGGATAAGTGGCTGACccaattatacaaaacccaggaCTCATTTTCACAAAGATATCATAGCAAAGTAGGAAGATTCTAAACATATAATGAAAAAAAAGAAGCTTTTATCTATTGCAATATAACTACGTTTGCATACTGCCACCTACCTGTGATCCTTAGATCATTGGGTCTGTAAGCTCACCATCCTCTCAACATTTGTTTTCATACAGTTCAGACCCAGTTATTTATATTTTACTCATCAAAATATCACTGAGATTAAAATGGGTTCATATACACAGCCGAGGTATCACCGTTGTCCAAACTTCTACTCTCTTACACATATGTTTAATCTCATTGCAAGTTTGTCTTTTACCAGACTGTTTTGCAGTGTTGTTCCATATGCACATGTTTTCCTCACGTGCCAAATTTCCCCTACAGGGTGTTCTGTTTGGTAAGTCAAATAACCTAAACATGAACGGTTATTATCATGGTAGACAAGGTCATTTATTTCAGGCTTGCAGGTTGAATCTTTACAAGTTGTTTCTGGACAATTAACTAATAATACTGTTCTCTTTTTTTCTATGAAAGTTgtatttttctatattttcttgGAAATAAGACACTACCAGTTTTGGGCTATTGAGACAGGTAATGCACGATATTAGCAGAGTAACATTTATCCATGTTTTATGTTTACTCTTAATCTAATTTATTTTTCAAGATGGCTGTGAATTATAATACTCAAGATCAAGTTGAGAGAACCTACGAAAACAATGTTTAATTGCTGTCAAAAACAAGCTTGTatacaaatacatttatttgataATGCGAATGATCTAAAATACATTACATTTGACTGATTCTTAGAACTAGGATTCCAAGATTGGGCCATGTAATATGATGGTGTCTGTGGTCACACAAAACGCCACTGAAATGTCCAAAAATAGCTATACTCTGGGCAATTGTGACAGCGCAATGCATTCGCTAGTTGCAGTATTCATGGTTTACCTTAATGTGCCGTCTCATCATTTAAAAATTAACACTTTTACGAGTTCGGATTCTTGTCATCGATAAAAGTTTGGTATTTTGGCGTGGACTGTGTTCGGGGAAGCCAGCCCCCGGTCATGGATCCggacctgatcaactctatgcgacgGAGATGTGTccactatttgcctcatgcagtgggtcacaccagatactaactggttttctgatccacgcccctaccttttttaaagggATCTATccctgaccaacagatgcatatctg

Function

GO: NA

KEGG:

id description
K04968 TRPC5; transient receptor potential cation channel subfamily C member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1020721 lncRNA upstream 48133 48538542 ~ 48539153 (+) True G897165
TU1020720 lncRNA upstream 48238 48538542 ~ 48539048 (+) False G897165
TU1020674 lncRNA upstream 62520 48524526 ~ 48524766 (+) True G897121
TU1020670 lncRNA upstream 83543 48501894 ~ 48503743 (+) True LOC110534159
TU1019696 lncRNA upstream 339198 48247229 ~ 48248088 (+) True G896226
TU1020795 lncRNA downstream 42375 48666776 ~ 48668107 (+) True G897237
TU1020885 lncRNA downstream 213315 48837716 ~ 48838679 (+) False LOC118936702
TU1020886 lncRNA downstream 213361 48837762 ~ 48838679 (+) True LOC118936702
TU1020897 lncRNA downstream 256146 48880547 ~ 48880763 (+) True G897336
TU1020898 lncRNA downstream 256463 48880864 ~ 48881140 (+) True G897337
XR_005034165.1 mRNA upstream 18873 48567576 ~ 48568413 (+) True LOC118936701
XM_021618871.2 mRNA upstream 36108 48550084 ~ 48551178 (+) True LOC110534165
XM_021618870.2 mRNA upstream 37343 48545218 ~ 48549943 (+) True LOC110534164
LOC110533135 mRNA upstream 54440 48529819 ~ 48532846 (+) True LOC110533135
XM_036933275.1 mRNA upstream 62821 48513122 ~ 48524465 (+) False LOC110534162
XM_036933288.1 mRNA downstream 180624 48805025 ~ 48840284 (+) False chm
XM_036933289.1 mRNA downstream 180624 48805025 ~ 48840284 (+) True chm
XM_036933291.1 mRNA downstream 212671 48837072 ~ 48838821 (+) False LOC118936702
XM_021618877.2 mRNA downstream 216203 48840604 ~ 48855932 (+) True LOC110534170
NM_001160516.1 mRNA downstream 286985 48911386 ~ 48927265 (+) True rtn3
TU1019687 other upstream 351670 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 676311 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1370215 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1382444 47203246 ~ 47204842 (+) True G895652
TU1019023 other upstream 1382662 47203246 ~ 47204624 (+) False G895652
TU1020802 other downstream 51856 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 653301 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 805998 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 1410589 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 3825817 52450218 ~ 52475365 (+) True G901849

Expression Profile