RNA id: XM_036933279.1


Basic Information

Item Value
RNA id XM_036933279.1
length 3430
RNA type mRNA
GC content 0.51
exon number 12
gene id dacha
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48666706 ~ 48795320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGGTTCTCATTCTAGCCACCGCACTTGTGAGATAGGTAGTTAGTTGCCCATTGCCGACTATCCGACGGGAGCGAGAGTGCATGTGAAACAGCAAGAGAAAAGATTGAGCGAGAAGTAGAAACAAAACGTAAaaggtgagacagagagtgaggaaAATAAGAAACTTAAGAAACTATGGCCGTGTCAGCAACTCCGCCGGTGCTTTCCCCAACATCTAATCCGGGGTCTGGCAGTTTATTCCGCTCCGATCCGCTGTATACAAGCCCAGCCGAGTCCCCGAGACTGACAAGCAGCTTGATCAACTCTTTCATCAGCAGCGGAGGAGGCGGTGGAGGAGGAAATGGAAACGGCACAAGCGGTAATAACGAGTGCAAAATGGTTGAGGTGCACGGGGTCAAGGTAGCCTCGTTCAACGTGGACGGTCAAGAACTCATCTGCCTGCCGCAGGTCTTCGACCTCTTCCTGAAACATCTGGTCGGGGGTCTGCACACCGTCTACACCAAGCTGAAGCGGCTGGATATATGCCCCGTCGTGTGCACGGTTGAGCAGGTTCGGATTCTGCGGGGGCTTGGGGCTATTCAGCCCGGGGTGAATCGCTGCAAACTCATCACCCGCAAGGACTTCGAGGCGCTCTACAACGACTGCACCAATGCCAGCTCCAGGCCTGGCCGCCCACCGAAGCGTTCCCTGGGGGTAGCGATGCAGGAGAGCTCCAGGCTTCTTCCCCACAGTGTCCATGGCCTATTGTCACCCGGACTCCTCTCATCCATGTCGCCCGGAGTATTTATGTGTTGTCCTGCAGGGCTGACGGCTGCAGCGATGGCCGAGGCTATGAAGCTGCAGAAGATGAAGCTGATGGCCATGAACAACCTCCACGGAGCCGGCAGCCAGAACGGGACCGAGTCAGAGAACGACGAGCTCAACTCCAACGCAGGCGGCAGCGAGTCCTCCTGGGACAAAGAGAAGCTCCAGTCTCCCCCCTCCTCCGGCGCTGCCCACGGCCTCGGTCACGCAGGCCTGTCAGGGCAGCACGGCCTGTCCAGCTCCCACCTCAGCTCTCTGCAGCAGAACCACCTACTGGCCAACCgacTGGACCTTCCATTCATGATGATGCCCCACCCCCTGCTGCCCGTCAGCCTGCCGCCTGCCTCTGTTGCCATGGCAATGAACCAGATGAACCACCTGAACACCATCGCAAACATGGCCGCTGCAGCTCAGATGCACAGCCCCTTGTCCAGAGCAGGAGCGTCTGTCATCAAGTCTGACCCTCGGTCTCTGTGGCAGGAGTGTGTCCAGGACAGCCCCTCTCCGGCGCCCTCCATGGAGGAAGGTCCTCGCCCGGGCTCCCAGCCCTCCTCACACCCCAGCAGCAGTGCCTCCAGCTCCCCAgccccacaccaacacaccccaGACCGCCTGGCGATGAATCCGGTTGACGGAGGCCTCGGGGAACGAGAGGCTGGGATCAACATGAAAAAGATGTTCAAAGAGAAAGCAGATGAGGCGCAGCTGGCCCTGCCCATGATGAAGCCAGGCTTTGAGAAGATGCCCCTGGGAGGACAGACCCTGCCTCCAGGCTTCCCTGCCCCCTTCCTCTTCGCCGACGGACTCAACTCTGTGGAGACTCTGCTCACCAACATCCAGGCGGCGCAGGGCCTGCTGAAGGTAGCGGTGGACAATGCTCGTGTCCAGGAGAAACAAGTCCAGCAGGAGAGGAAGGAGCTCAAGATGGAGctctacagggagagagagatgagagagagtctGGAGAGACAGCTCACCTCCGAACTGCACAGCCGAgCCACCATCCAGAAGCGcctgaagaaggagaagaaggctAAGAGGAAACTGCAGGAGGCTCTGGAGTTTGAGTCCAAGCGTCGGGAGCAGGTGGAGCAGGCCCTCAAAACGGCCACCTCCCCAGAGAACCTCTGCATGAGTCTCAACGAGGCAGTGATACCAGAGGTTGAGCCGGAGCATAACGGCAGCCAGCAGGAGAACTCGGCTGTACAGGAGAACAGACCCTACACCAAGCCTCCCATAATGTACTGAGAGAGACCTCCAGCTTCTCTAGACCTGGCCCAGGGCTGTCGCTGCAGGCTTCCCCAGAGACAGAGCCCTTGGCTGGGAGAGGACGAGTGGAGAAGAGGGATGactggagggaggaatggatcCCCTGAAACTCATGTACAGGACTGCAGAGAGGGTGTGGTGGGGCGAGAGGCAACACTGGAGTGCCACTTATTGCTGCCCCATCATCTCACTTCAGctacttgtaaaaaaaaatctctctATTTGACTTGTTTTGACTACTTTTGTTCTACCCTCTTTGAGAGAAAAAAGTAAGGACCATTGAAAATAAAACTGTCTTGGATTTCTCTCTACTCCCTGTGAAGCACATACAGAAGCCTATCCTCCTTCTCTATCCTATTTCTCTCCAAGCCGATTTTCCtctggttattattattattattgttatgaattattattgctattattattCTCGTTATTAGTTGTTGATTCCTCCAATGCCCCAATAGCACAAGTCTTGCAGCGCATATATAGGATCATATCTTCCTAAAGCTCAAAAGTCTGAAGGAGGATATGAAATGTCAAATTCAAGACAAAGATGTGCTTCTCTTCTTCTATCCCGTTCATCATCAAGTAAAAGGGACTCAAACGGTTTCTGAATTTCTACGCTTTTCCCCCTCTTTTTTCCGGggtggatgggggaggggggggggggggggggttattgttGAAAAATGtcactactgtctgttgactTAGAAATGTGTCCGCTCCCTGAACTGCATTGTTCCAGTgtttattttgtgtgtttttactcAAAGCTCAGTCTGGATACAAAGAAAGAGATATTGAGTTCTATCCTATAGAGCCCTTCCTCCTGTAAAGGTTTCTCTGTTGCTGTGTTCAGTTCAAAGGTTCTATTGCTGTTAtaaatacagtattacagtaaccCCTGTtctgtttacccccccccccccccccttcgtttttagacatgtaaaaaaaaaaatgctttagcGTTTGCTATTCTGACGTCGTAATAAAGTGGATACATTTttagtgagaaaaaaaaaacgaaagtAAAATGAAATACCCCAATGCACATCCGATGCAAGCATGCATGTAGATACGACACTGGTAAAAAGTTACACTTGCTGGTTTAAAAAAGCTgccaatttaaatatatttttaaagaatTTTGGGGAATTTCATTATTACCATGATCACAACCAGGCAGCTATCTAAAATTGTTGACCTTGTTTTAATGATAATAGTATCACATCACAGCCTTGCACAtaacacaaaaacaataaaacataCTTCTGGACATCGTGGTCgatttgttagttttttttgttggtttggtttggtttttagTAATAAAGTTCTAGATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1021020 lncRNA downstream 18249 48548881 ~ 48648457 (-) True G897448
TU1021002 lncRNA downstream 111921 48525267 ~ 48554785 (-) True G897432
TU1020992 lncRNA downstream 162965 48501662 ~ 48503741 (-) True LOC110534161
TU1020994 lncRNA downstream 165298 48498836 ~ 48501408 (-) True G897425
TU1020640 lncRNA downstream 253510 48410972 ~ 48413196 (-) True G897091
TU1021162 lncRNA upstream 23213 48818530 ~ 48828814 (-) True G897579
TU1021186 lncRNA upstream 48040 48843357 ~ 48843664 (-) True G897603
TU1021208 lncRNA upstream 86410 48881727 ~ 48884075 (-) False LOC110534172
TU1021234 lncRNA upstream 116051 48911368 ~ 48917423 (-) True G897640
TU1021278 lncRNA upstream 184164 48979481 ~ 48980569 (-) False G897679
XM_021618873.2 mRNA downstream 32104 48626002 ~ 48634602 (-) False alg13
XM_021618874.2 mRNA downstream 32104 48626002 ~ 48634602 (-) False alg13
XM_036933278.1 mRNA downstream 32104 48626002 ~ 48634602 (-) True alg13
XM_021618875.2 mRNA downstream 32114 48626002 ~ 48634592 (-) False alg13
XM_021618869.2 mRNA downstream 121768 48536413 ~ 48544938 (-) True LOC110534163
XM_021618881.2 mRNA upstream 59535 48854852 ~ 48876767 (-) False LOC110534171
XM_021618879.2 mRNA upstream 59535 48854852 ~ 48877857 (-) False LOC110534171
XM_021618880.2 mRNA upstream 61281 48856598 ~ 48877877 (-) True LOC110534171
XR_002475088.2 mRNA upstream 86132 48881449 ~ 48907973 (-) False LOC110534172
XM_021618884.2 mRNA upstream 86134 48881451 ~ 48907962 (-) False LOC110534172
TU1020355 other downstream 677630 47987761 ~ 47989076 (-) True G896841
TU1019905 other downstream 1433660 47230804 ~ 47233046 (-) True LOC110534118
TU1018170 other downstream 2748367 45917279 ~ 45918339 (-) True G894917
TU1018024 other downstream 2916375 45747315 ~ 45750331 (-) False LOC110534046
TU1021210 other upstream 86410 48881727 ~ 48884075 (-) True LOC110534172
TU1023166 other upstream 1360875 50156192 ~ 50156902 (-) True G899409
TU1023178 other upstream 1387079 50182396 ~ 50182788 (-) True G899421
TU1023349 other upstream 1670150 50465467 ~ 50471878 (-) False LOC110534220
TU1023512 other upstream 1925669 50720986 ~ 50721603 (-) True G899727