RNA id: XM_036933291.1


Basic Information

Item Value
RNA id XM_036933291.1
length 1698
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC118936702
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48837072 ~ 48838821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtggtcaggtgtgtgtgtgtgtgtggtcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtgtatggAGAAGATGCGTGGATGGACAGGGGTGTATGTGGTCAGGTGTATGGAGAGGATGTGTGGATGGACAGGGGTGTATGTGGTCAGGTGTATGGAGAGGATGTGTGGATGGACAGGGGTGTATGTGGTCAGGTGTATGGAGAGGATGTGTGGATGGACAGGGGTGTATGTTGAGGTTGGGTGTATGTGGTCAGGTGTATGGAGAAGATGTGTGGATGGACAGAGGTGTATGTGGTCAGGTGTATGGAGAAGATGTGTGGATGGACAGAGGTGTATGTGGTCAGATGTATGGAGAGGATGTGTGGATGGACAGGGGTGTATGTGGTCAGATGTATGGAGAAGATGTGTGGATGGACAGGGGTGTATGTGGTCAGATGTATGGAGAGGATGTGTGGATGGACAGGGGTGTATGTGGTCAGATGTATGGAGAAGATGTGTGGATGGACAGGGGTGTATGTGGTCAGGTGTATGGAGAGGATGTGTGGATGGACAGGGGTGTATGTTGAGGTTGGGTGTATGTGGTCAGGTGAATGGAGAAGATGTGTATGTTGAGGTTGGGTGTATGTGGTCAGGTGTATGGAGAAGATGTGTGGATGGACAGGGCTTGAATGTTGAGGTTGGGTGTATGTGGTCAGGTGTATGGAGAGGATGTGTGGATGGACAGGGGTGTATGTGGTCAGGTGTATGGAGAGGATGTGTGGATGGACAGGGGTGTATGTTGAGGTTGGGTGTATGTGGTCAGGTGAATGGAGAAGATGTGTATGTTGAGGTTGGGTGTATGTGGTCAGGTGTATGGAGAGGATGTGTGGATGGACAGGGGTGTATGTTGAGGTTGGGTGGCCTTTTGAAGTGTCGTCACGTTGATGGTGCCACACCTCTGCTGCTCACCAAATTAACTAAATCACTCTGCTACCCAAGGCAGGAAAAGTAACACATATTATAATTGTGTGACATTTTGGTAATGACCACACTGACATTTCAGACTGACAcctttttccctctctttctttgggtacctttttttttttggtccCTTACATTTTAAAGGGTAATGATACAGAATGACGTTTTTTACGCTTTGAAAACCAGGAGCCTTCTCGCAGCTCCAAATCATCCTCTCTCGTTTTTGTTTGACCGCTTCAAGTCTCACTCACGGACCGATCAAAGAGTGTCAAGAAACACTTTCCCATGTGCCTTGTCGGCAAACCAAATGTCACCCCATTAACAGGAATCATGCTTCCCCACAGATAAGATGTGTTGAAAGGGGCCTGTTAAGTTCCCGTCTCTTCTCAAACACCGACGGAAATATTCCTCCACGACTAAATTGGCACCATTATGGCTGAGCATTTCTACCCGAAAATATGAATTTGAGTTAATGATTCAATTATTTGGTAACTTACTGTTACTAATACCCTGTTATCTAGGGATTTTTTTTCAACGGCAGACGTGAGCTGCATCCGTATAGCGGTAACATACATCATATGTTCCTGAAACATTTCAGCTAATGTCAGGTGATTCCTCCGTTGATCTTCAGTGCGACTTCTGTCCGTGCACGGCTCTCTGTAGAAATctgaacactacattacattcaTGACGCCGGTCCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1020795 lncRNA upstream 168965 48666776 ~ 48668107 (+) True G897237
TU1020764 lncRNA upstream 215099 48596351 ~ 48621973 (+) True G897207
TU1020721 lncRNA upstream 297919 48538542 ~ 48539153 (+) True G897165
TU1020720 lncRNA upstream 298024 48538542 ~ 48539048 (+) False G897165
TU1020674 lncRNA upstream 312306 48524526 ~ 48524766 (+) True G897121
TU1020897 lncRNA downstream 41726 48880547 ~ 48880763 (+) True G897336
TU1020898 lncRNA downstream 42043 48880864 ~ 48881140 (+) True G897337
TU1020926 lncRNA downstream 98817 48937638 ~ 48964172 (+) True G897362
TU1021295 lncRNA downstream 161331 49000152 ~ 49000627 (+) True G897689
TU1021296 lncRNA downstream 164209 49003030 ~ 49003245 (+) True G897690
XM_021618872.2 mRNA upstream 212671 48587286 ~ 48624401 (+) True LOC110534166
XR_005034165.1 mRNA upstream 268659 48567576 ~ 48568413 (+) True LOC118936701
XM_021618871.2 mRNA upstream 285894 48550084 ~ 48551178 (+) True LOC110534165
XM_021618870.2 mRNA upstream 287129 48545218 ~ 48549943 (+) True LOC110534164
LOC110533135 mRNA upstream 304226 48529819 ~ 48532846 (+) True LOC110533135
XM_021618877.2 mRNA downstream 1783 48840604 ~ 48855932 (+) True LOC110534170
NM_001160516.1 mRNA downstream 72565 48911386 ~ 48927265 (+) True rtn3
XM_021618886.2 mRNA downstream 106842 48945663 ~ 48955133 (+) False LOC110534173
XM_036933292.1 mRNA downstream 106842 48945663 ~ 48955133 (+) True LOC110534173
XM_021618887.2 mRNA downstream 140711 48979532 ~ 48980528 (+) True LOC110534174
TU1020802 other upstream 160007 48676257 ~ 48677065 (+) True G897244
TU1019687 other upstream 601456 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 926097 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1620001 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1632230 47203246 ~ 47204842 (+) True G895652
TU1021453 other downstream 438881 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 591578 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 1196169 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 3611397 52450218 ~ 52475365 (+) True G901849
TU1025781 other downstream 3693907 52532728 ~ 52535650 (+) True LOC110534253

Expression Profile