RNA id: XM_021618886.2


Basic Information

Item Value
RNA id XM_021618886.2
length 3537
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC110534173
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48945663 ~ 48955133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCAACACATGCAAACCCCCATGATGCTCTGCGAAAAACGCCGATGGCAATACATAATAGTTACATTGATTGAGCTGTTAATGTTATTCATGTGATAAAACTCATTTACCTGCCCATCTGCCGCCCTTGCTAGCTCAGCTGCCGAACAGGTAATACAGGTGAGACTATGCTGCACAGATTTGTTGCGCGTAGCCCACACACCGTCACTGTTGTCAGAAAGCAGAACAACCGAAAACCCCTTCAGTGTTAGGAGGGTAAGGAGTCTGTCTACAAGTTCCCTGGCCTGTTATCACGCTTGTTTGAACATCGCAATtgagcagagcagaacagcagAGCAGCGACAAGACGTGTTTGTGTCTCCTACTGTGAATTTGATGTCTGTCCCCCTCGGTCCAGACATGCCTGTGCCAGTACCTAAACCACGGGCACGGTACAAGCGGGCTGGCGGGAGCTTACAGAGCCAGCTCTCTTCTGAGAGGGATTTTCTATGTGATACACCTGATCCAACGGCAAGTACAGGAAATCCTAGCAAAGGTGTTCCACCCACAAATTATTTGCTGGTAGAAAGTGAAGACAACCATGCCATTATCCTAAATAAACCTCCGTTCAGCCCTGCCATCCCCAGCCCGGCTAATGAGAATCAAAGCCAGCATAACTTCCCTCTCTCCAGATCTGATTCTGGAGTGACTCTGTCTTGCCCATTACTGGGCAGTAAGGATCCAGATGGGCTCCACGACAGATCTGCCTGGTCATCCAACCCTCCATACAGTTCTGCTGCAGATTATGACCCCTATATTACTGTAGTAGCTGACTGGGCAAAAGACCTTGGATCGGAATCTTCCAATGATGATGATGCCGTTACTGGAGAAATAAAGAACCCATCTCAGATGAACAATGTGGTGTCAAGGCAGGTTGGTGTTGTCCCCAATGGAGAAACCCCTCAGCCTCCTGTGGAACAGGCGTCTATGCAGACCAGACCAATCAAACAAAAGACCCCACGTGCTGCCACCATCCGCGTCAGCAGGAGAAAGCAGGCAGCAGCGAGCGGTGGTGGTGCCCAGATAGCAGAGTCCTCTCGTAGGGAGAGTGTTGTGTCCAGATCCAGCTGGCTGGATGTATGGAAGGGACGCAGGCACAATGTTCTGTGGGCCACCCTGGATGGACAGTTGGTATCACTATGGAAGAAACGCACAGACAAGTTCACAGACATAGTGTTCCACGTGTCAAGCATCACCGACGTCCGTAAGCAGGAGAAAGGACGCTTCTCCGTTTACTTCAGCAAGAAACACTTTGAGTTCATGGCACACAACAAAGAGGTGCAGGAGGGCTGGGTGACTTCCCTTCTGGCTTCTCGTGGGCGGGAACCCCCAGTCCCTCCGGAGCAGCATGGAGCCCTGACCATGAAGGGCCCTCGCAACAACAGAGTGTACGCTGCCATCTGTGGACACAACCTATGGATCTACAACAATAAAGAGGACTTCCAGTTGGGGGTTGGGATGACCTTTGTGTCCATGAACGTGGCGTCAGTGAAGCAGACTGGCCGTCATAGCTTCAGCCTCATCACACCGTACAAAACCTTCAATTTCTCCACAGACTCGTTGAGGGAGCTGGGCGTGTGGTTGGAGAGCCTGACCCAGGTGATCCGCAGTGCCCTGTCATGCAGCGAGGTGGCCGAGCGACTCTGGGCCAGCCCATGGAACAAAGTGTGTGCCGACTGTGGCTGTGCCAACCCTGAGTGGGCCTCAGTCAACCTGCTAGTGGTCATCTGTGAGGCTTGTGCAGGCCAGCATCGGTCTTTGGGCATGCATGTGTCCAAAGTGAGAAGCCTGAAGTTGGACATTAAAGTGTGGACCGAACCTCTGATTCTGCTCTTTGTCCATTATGGGAACAAAGCAGCCAATGATGTGTGGGCTCACAACGTGCCGGGTGCAGAGCAGATCCTGCCGGACTCCTCTGTGGATCAGAGGGGGGAGTTCATTAGGGCCAAGTACACCAAAGGTCGATACAGACGGACCCATCCGTTAGCCTCCAGCCAGAACCTGCTCAACAAGAGGCTGTGTGAGATAGTGTGTGGCCCTAATGTCCCAGAGACCATGTCCCTGCTGTGCTCGGGGGCGCGGGTCCTGTGCCACTCAGGGGACCCTCATTGCTCCTCACCCATCTCACTGGCAGAGCGGGCTGGACAGGCCATGCAGACTGAGCTCCTCAGACACAACGAGTACACAGAGCCCCCTGCCTATGCTCATCAGAAGCCCAGCAGAGACCCTGCTACCTCTGTCCCCTTGTCTGCTGCAGGAGAGGAGCTCCATGGGAAGCTGGAGGAGGACCGCTTCCTGTTCTCCCAGGAGAAcgactctgctgcctgtgatgtTCTGGACCTGAGGGAGGTCATCTCCATCTTCGACTGCTCCAACGGACCAACTCATGCATTTGAGATGGTGACTCTGACGGACCAGTTGCTGTGCAGTTCTGATACAGAAGATGGTTTACTCATACACCTTCTCCATATTCTCAAGgTGTTGTTGCCCGGGCCCATAGAGGAGGAGCTGGACAGGGGGTTTGCTATGTCCCGGGTgtctctgagggagggaggaggcctGCAGCACAACGAGGTCTGGGCAGTGCTCCGTGGAGGTCAGGTCCTCATCTATCCTACTGACCAGCAGGGCCACAGAGAAAGGCTAACACTCAACCTCGAGACGCAATACAAGATAGATTCCTCTGAGAACACCATAGAGCTGGTCACTGGAGAGAGAACCATGTCCATGCAGTTTGAACGAGACCACAGCTGTCAGTCCTGGCACAGCTTACTGAAACGGGCAGTGACCACAGAGAGGAAACTGTACCAGCTGCCCCCCAACGCCATTGGCAATGTGCCCCCTGCCATCGAGAGGTGTATCTCACACATCACACAATATGgtttAAAGGTGGATGGGCTGTACCGGCGCTGTGGCTTGGCCACAAAGATCAGTTGTCTGGTGGAGGCCCTCAGCAGTTCACCTACAACTACACCTCTGGAGACAGACGAAGAGGGTCTCCTGGACGCTGCGGGGGCCCTGAAGCAGTATGTCCGCCAGCAGGTGGTGCTCATCCCagaaacacacaggaaactgtgggTGGAGGCCGCAGCTCACACAGAAGAGACCTTTAGACTGACTACATACCGCGGACTACTGAAGAAGCTGCCCCCTGACAATAGAATCACACTCAATGCCCTCTGTGGACACTTCTACATAGTTCAGCAGTATAGTGCAGAGAACCGTATGACAGCTCAGAACCTGGCACTGGTGTTTGTCCCCACACTATTCCAGGAGCTGGCCATGAACACTGACATGGTGCAGCTCACCAGAGAGCTCATTATCCACTACACACTCCTCTTCCTGGGTAAAGAAGAGGAGTCTGACATGGAGAGTGAAGAACTAATAACTAAGTTttgaaaaaatatacagtaccagtcaaatgtttggacacatctactcattcaagggtttttcttttttttggtactacatatggaatcatgtagtaaccaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1020898 lncRNA upstream 64523 48880864 ~ 48881140 (+) True G897337
TU1020897 lncRNA upstream 64900 48880547 ~ 48880763 (+) True G897336
TU1020885 lncRNA upstream 106984 48837716 ~ 48838679 (+) False LOC118936702
TU1020886 lncRNA upstream 106984 48837762 ~ 48838679 (+) True LOC118936702
TU1020795 lncRNA upstream 277556 48666776 ~ 48668107 (+) True G897237
TU1021295 lncRNA downstream 45019 49000152 ~ 49000627 (+) True G897689
TU1021296 lncRNA downstream 47897 49003030 ~ 49003245 (+) True G897690
TU1021371 lncRNA downstream 158188 49113321 ~ 49115378 (+) True G897764
TU1021384 lncRNA downstream 176727 49131860 ~ 49132088 (+) True G897776
TU1021386 lncRNA downstream 180228 49135361 ~ 49135561 (+) True G897778
NM_001160516.1 mRNA upstream 18398 48911386 ~ 48927265 (+) True rtn3
XM_021618877.2 mRNA upstream 89731 48840604 ~ 48855932 (+) True LOC110534170
XM_036933288.1 mRNA upstream 105379 48805025 ~ 48840284 (+) False chm
XM_036933289.1 mRNA upstream 105379 48805025 ~ 48840284 (+) True chm
XM_036933291.1 mRNA upstream 106842 48837072 ~ 48838821 (+) False LOC118936702
XM_021618887.2 mRNA downstream 24399 48979532 ~ 48980528 (+) True LOC110534174
XM_021618888.2 mRNA downstream 33206 48988339 ~ 48993933 (+) True LOC110534176
XM_036933294.1 mRNA downstream 74430 49029563 ~ 49103820 (+) False LOC110534177
XM_036933295.1 mRNA downstream 74430 49029563 ~ 49103820 (+) True LOC110534177
XM_021618890.2 mRNA downstream 205497 49160630 ~ 49181760 (+) False LOC110534178
TU1020802 other upstream 268598 48676257 ~ 48677065 (+) True G897244
TU1019687 other upstream 710047 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 1034688 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1728592 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1740821 47203246 ~ 47204842 (+) True G895652
TU1021453 other downstream 322569 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 475266 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 1079857 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 3495085 52450218 ~ 52475365 (+) True G901849
TU1025781 other downstream 3577595 52532728 ~ 52535650 (+) True LOC110534253

Expression Profile