RNA id: XM_021618888.2


Basic Information

Item Value
RNA id XM_021618888.2
length 2836
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC110534176
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48988339 ~ 48993933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGAGACGCGGGCGGAGTTAACAACAACCACTGAGAGGAGAAATAGTGGAAAAGATAGGCTAATGTAGGCTACTGTAAATATCAAACCATACTTGGCCGGCCAGTGTTTAGTGGGGACTAGGGAATGGTTATCAGCGCGCCTGGAAACGATGCAACTTTATAATGTGCAGTAGTAGCTTTCAAAGTTTAGAGGTCAAGTTTACAGAAGAGAAGCTTGGACGTTGTAAACGCAGAAGACCGTCATGATGACGAATGAGAATCTGCGGCAGAAACAATGTTTCCACTCTGCATCCTAGGATCATCAATTACGCGCGTGTGTATACGTATTATTTCAAGAATGTGTGTAATGCAAAAAGATAAACCAGAGACTAGAGTGCGAGTACCCTAACGACTCTGTCCAAGTGCACTCTAAAATCAGTAAAAATGCACGCAGTTACCAGCCTCTCAATGGTCAGTTTGCTAAGTTTTGGCTACCTATCCATGGACTGGATCAAGCCGAATCAAGTGGAGGAGCACACTCAAAACGATGCCTCTATTACGTTTGCGCCTAAGCAACCACCACACATTATATTCATACTGACGGATGACCAAGGCTTCAATGACATAGGTTATCACAACCCGGACATTCGGACTCCAACTCTGGACAAACTGGCCGCGGAGGGGGTGAAGCTGGAGAATTACTATGTTCAACCTATCTGCACTCCGTCACGCAGTCAGTTGATCACGGGCAGATACCAGATCCACACAGGCCTCCAGCACTCTATCATCCGGCCTCGCCAGCCCAACTGCCTCCCCCTGGACATGACCACGCTCCCACAGCGGCTGCAGGAAGCGGGGTACGCTACTCACATGGTGGGCAAATGGCACCTTGGCTTCTACAGGAAGGAGTGTCTGCCCACGCGCCGAGGCTTCCACAGCTACTTTGGCTCTCTGACGGGCAGCGTGGACTACTACACGTATGGCTCCTGTGACGGACCAGGCCTGTGTGGCTACGACCTCCACGAGGGGGAAACCGTGGCCTGGGGCCGTGGAGGCAAGTTCTCCACCCACCTCTACACGCAGAGGGTACGCAAGATCCTATCCACTCACGATCCGTCCCGCCAGCCTCTGttcatgttcctctccctccaggCTGTCCACACGCCCCTTCAGTCACCCAAGGCCTACATCTACCCCTACCGCGGGATGGGGAACGTAGCCAGAAGGAAGTACGCAGCCATGGTGTCCATCGTCGACGAGGCTGTACGCAATGTCACCTACGCTCTGCGCAAGTACGGCTACTACCGCAACAGTGTGCTCATCTTCTCCACTGACAACGGTGCCCAGCCGTTCACTGGGGGGAGTAACTGGCCCCTGCGAGGGCGTAAGGGGACCTACTGGGAGGGAGGCATCCGTGGGGTGGGCTTCGTACACAGCCCCCTGCTGCGTCACAAGCGGAGGGTTTCCAAGGCCCTCTTGCACATCACTGACTGGTACCCAACCCTGGTTGGTCTGGCTGGGGGTAACGTGTCACAGACTGAGGGTCTTGACGGCTACAATGTATGGCCAACTATCAGTGAGGGCAGGGAGTCCCCACGCCTGGAGATCCTCCATAACATTGACCCACTCCACCGGCGCTCTGGCCTGGCGTCTGGGTCTGGACAGCAGGCCCAGCATGTGTGGGACACTTCGGTCCAAGCTGCCATCCGGGTGGGGGACTGGAAGCTGCTAACAGGGGACCCGGGCCATGGAGACTGGGTCCCACCACAGGTACTGGCCAACTTCCCAGGCAGCTGGTGGAACCTGGAGCGGAACACTGAGGGAACAGGGAAGTCTGTGTGGCTCTTCAACATCACAGGAGACCCCTATGAACGCAGTGACATGGCTGTGCAGAGGCCTGATGTGGTCAAGAAGCTGCTAGAACGTCTGGCCTACTACAACTGCACTGCCGTCCCTGTTAGGTTCCCCACCGACGATCCCCGGGCCAATCCAGACCGCAACGGGGGGGCCTGGGTACCCTGGGTCGGGGGGGACGAGGACGAGCCGAAATGGAACGGGGTTTATAAGAAAGGGaggaataaaaagaagaagaaatgcAAGCTGTGCAAACTGAGATCCTTTTTCAAGAAACTGAATACAAGGATAATGTCCAATAGAATATGAGGTGGGAAAGTCAATGACACTCAGTCACAAGTAGCCTATACATTTTACACTGCAAGAGTAATCTGAGCCAGCAaacacgttgtgtgtgtgtgacaatggAAAATGATGTTTACTATCCTGCATCTCGTTGAGTGTGCTGTCATATGTTTTTTGGATGTAGGACTATTGGGTTCTATTGTGTTTATAAAATGTTCTATTTGATCCACTTGTAGTGCGTAGCTAAGTGAATTCAACATGTTTATGTTGACCTACTCACTTGGGGTTATTTCAGCAGTAGTGACATGAACTGACctgttttacttttctatattTTTGAAAACATCTAAGTTAATTCAACAGAAGCTAATGGGTGATTCCTCGTGAACAAAACAAGCCCATGATTTTGGGGACTTTCATATCATTTAATCGATAGAAGAgtcctttggaggaaggattgttgacatgtatttgacatttgtatcttTTTTGGCCTTACCTGGGCCTCCTTTTAAAGCTGTGATCAGCGATAGGCAAAACAGAGCCATTGGCCGCACCAAGCGCatttgttttgtaaaaaaaaacatttgtaaatcaaatcaaatgtatttatatagccctttgtccatcagctgatatctcaaagtgctgtacagaaacccaggatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccaaa

Function

GO: NA

KEGG:

id description
K12375 ARSI_J; arylsulfatase I/J

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1020926 lncRNA upstream 24167 48937638 ~ 48964172 (+) True G897362
TU1020898 lncRNA upstream 107199 48880864 ~ 48881140 (+) True G897337
TU1020897 lncRNA upstream 107576 48880547 ~ 48880763 (+) True G897336
TU1020885 lncRNA upstream 149660 48837716 ~ 48838679 (+) False LOC118936702
TU1021295 lncRNA downstream 6219 49000152 ~ 49000627 (+) True G897689
TU1021296 lncRNA downstream 9097 49003030 ~ 49003245 (+) True G897690
TU1021371 lncRNA downstream 119388 49113321 ~ 49115378 (+) True G897764
TU1021384 lncRNA downstream 137927 49131860 ~ 49132088 (+) True G897776
TU1021386 lncRNA downstream 141428 49135361 ~ 49135561 (+) True G897778
XM_021618887.2 mRNA upstream 7811 48979532 ~ 48980528 (+) True LOC110534174
XM_021618886.2 mRNA upstream 33206 48945663 ~ 48955133 (+) False LOC110534173
XM_036933292.1 mRNA upstream 33206 48945663 ~ 48955133 (+) True LOC110534173
NM_001160516.1 mRNA upstream 61074 48911386 ~ 48927265 (+) True rtn3
XM_021618877.2 mRNA upstream 132407 48840604 ~ 48855932 (+) True LOC110534170
XM_036933294.1 mRNA downstream 35630 49029563 ~ 49103820 (+) False LOC110534177
XM_036933295.1 mRNA downstream 35630 49029563 ~ 49103820 (+) True LOC110534177
XM_021618890.2 mRNA downstream 166697 49160630 ~ 49181760 (+) False LOC110534178
XM_021618892.2 mRNA downstream 166697 49160630 ~ 49181760 (+) True LOC110534178
XM_021618894.2 mRNA downstream 196010 49189943 ~ 49212130 (+) False LOC110534179
TU1020802 other upstream 311274 48676257 ~ 48677065 (+) True G897244
TU1019687 other upstream 752723 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 1077364 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1771268 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1783497 47203246 ~ 47204842 (+) True G895652
TU1021453 other downstream 283769 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 436466 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 1041057 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 3456285 52450218 ~ 52475365 (+) True G901849
TU1025781 other downstream 3538795 52532728 ~ 52535650 (+) True LOC110534253

Expression Profile