RNA id: XM_021618892.2


Basic Information

Item Value
RNA id XM_021618892.2
length 4228
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC110534178
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49160630 ~ 49181760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGCATTTTCTAGCCAGCCACTCACATCCTGAGAAGGAAAAGGAAAAAGAAGGGCTGAAAAGCCAAGATTGAAAACAGATATAGAGCTTGGACCCTCAAAGAAAGGCAGCAGCCATTCTCTTTTCTCGCTCTTTATCGGAATGGAATGATATTGACTTTCAAGGCAATAATAGACTTCCGCCAGTGGATAAGATATTTATTTTGTATTGATTTGTTTGTCCTTTTGCAGTAAGAACGGACATAGAAATTCTAGCCAGAATGCTGTCCCGGAGAAGGAGGAGGAACTGTTTACCCTAATGGCTTCAAGAgaattgttgtgtattgtttacTTCCCATACACCCACTCTCCTAAAGCATGCGCCAGACGGAAGGTTTCCACCCATATATCCCTGCAAATTGAAGGAGCTCACTCAACATCAAAATCAAGGACTTTTCTCCAACTCAGAAAGGATACGAGAAATCTTACTAGTCAACAGACAAGACAGGGTGGTGAAAAATGTGGAGAGGAACTCTCCCAAGACATACTGTAGCTGGGAAGGACATTAACTTCACTTGCTGAGGATCACGATAGCTGCCTGAAGGGTCTTGTAGCAGAGAGAGTGTTATCAATTCACACTGGCACTATGGAGATGGGCTTGGCAAAGTCTCTGCCTTTGGTGGCCATCTTTGCAGTGCTGCTGCAGTTTTGTCCAGAGGGCTTCAGTctggagctcagccccagtgagaAGGAGGTCATACTGAGCACCAACTCCTCCTTCACGGTGGTCTGTTCTGGTTGGAGCAAGGTGACCTGGAAGTCTCCCCACGACCCCAGCCTGGAGGGAGTGGCTGTGGAGGACAGGGGAACCACCAGTGTGCTGGTCCTCCACAACGTCACCTGGAGGCACTCTGGGAACTATATCTGTGAAGAGCCCTCTACAGAGGAGGCCAAGGACATATCGGTGTTTGTACCAGACCCTGAGGAATGGTTTCTTCCCCTGCAGCAAGCAGTAGTgatgaaggagggagaggaaggtacCATTCCCTGCGTGGTGACTGACCCTGGCATTAACGTGACCCTGTACGAGAGGGCCAGCAAGGCCCGTGTGGAGGGAACATACCACCCCAGTAAAGGGTTCACCGCCATCCTGAAAGACAGCTCCTACATCTGCCGAGGTGCCATGAATGGAGAGGAGAAGGCGTCCCAGGTGTAttatgtctacagcattgtggTCCCCAAATCCATGAACGCCTTCATGACACTCTCAAAGACGGTGCTGAAACAAGGCGAGGCCTTAATGGTTAATTGTACTGTAGAAGAAGCAGAGATCGTTTACTTCGAATGGGATTTTCCTCGTAAAGAGACAATTGAGCCACTGACAGACTTTCTATCGGAGATTAGAATCCGCTCCTTCTTGAACATCTCCAGTGTTACTCTGGAGGACTCTGGCCAGTACATCTGCCGAGTGCAGGACCCTCTTTCCGAAACGTCAGCCATGGATAATCTCACTGTCACTGTTCTGGAACGGGGCTTTGTGGATTTGGAACCCTCCATCAACACCAATGTTTCAGCGCTGCAGTATCAGAGCGTTACGCTCACAGTGCAGATCGAAGCGTTTCCCAAACCTCAGGTGCTCTGGACCAGAGACAACAACACCCTTACTGGGGAAACTGTATCCATTGACACCAGAGAGGTGCATGAGACCAGTTACCTCAGTACTCTGACCTTGGTAAGGGTCCGGATGGAACAGAGGGGACTCTACACTGTCCAGGTGGCCAATGAAGACGACGTCAAGGAGATAACCTTTGATCTTCAAGTCAAGTCTTCCCCGAAGATAATAGATTTGTCTGACCAGCACATAGACCAGGGCCACGGAGTGCTCTGTGTCACAGAGGGGGTCCCCACACCCACCGTCCACTGGTACAGCTGTGAAAGCATTGGAAAATGCAGTAATAAGACCACAGCATGGAAGTCTCTTTCGGCTGACCAAGAGAACGTCAGCATCCAGATGAACGTCAGCTACATCGAGGCCTCAGGGGTCAACCAAGTCCGCAGCCTTTTGACCTTCCAGACCATGGGGGGTATTACATCAGTACGCTGTGAAGCCCGCAACGAGAGAGGGCGCAGGGCCTGGGACATCAAACTGGTCTCGAACTCTCTGTTCTCCCAGGTGGCTGTCTTGGCTGCAGTGTTAGCCCTGGTGGTCATTGCCGTCATcttcctcatcatcctcatcgCCCTTTGGAGAAAGAAGCCCCGGTATGAGATCCGTTGGAAGGTGATCGAGTCAGTGAGCTCAGATGGCCATAAGTACACCTACATGGACCCCATGCACCTGCCATATGACTGTGTATGGGAGGTTCCCCGGGATAGCCTGGTCCTGGGTCACACTCTGGGTTCTGGAGCATTTGGGAGGGTCGTGGAGGCCACGGCCTATGGCCTTGGTCACACTCAGTCCACCACCAAAGTGGCTGTGAAGATGCTCAAGTccacaGCAAGGACAAGTGAGACTCAGGCTCTGATATCTGAGCTGAAGATAATGAGTCACCTTGGGCCCCATCTAAACATCGTCAACCTACTGGGGGCTTGTACGAAACGAGGTCCCATTTACCTCATAACTGAGTACTGTTGCTATGGTGACTTGGTTGACTACCTTCACCGCAACAAGCATACCTTCCTGCAGTACTACGCAGACAAAAACCGCAGGGATGCTGATATGTGCAGGAACAGCACAGAGAGTACAGTCCAAATCCAAGGAAAAAGTGAGTGCGATGGGGGTTACATGGACATGACCAAGGAAGATTCTTTAAATTATGTCCCAATGCAAGAGCTGAGTGACAACATCAAGTATGCAGACATCGAGCCTTCAGTCAATGAGACACCCTACCATCAGGACAACAACTACCAAGGACAAGGCCAAGAGAGAGCAGACGTCGCGTTGTCTATCAGTGACTCCCCAATTCTGAGCTACACAGATCTGGTGGGCTTTAGCTACCAAGTGGCTAAGGGCATGGACTTCCTGGCATCCAAGAATTGTGTTCATCGTGACCTGGCTGCCAGAAATGTTCTCATCTGCGAGGGAAAGCTGGTGAAGATCTGTGACTTTGGCCTGGCCCGTGATGTCACGAACGACTCCAACTACATAGCCAAAGGCAACACATTCCTGCCACTGAAGTGGATGGCTCCAGAGAGTATCTTCCAGAACCTCTACACAACCTTGAGCGATGTTTGGTCTTTTGGCATTCTGCTTTCAGAGATCTTTACTTTAGGAGGAACGCCCTATCCTGACATTCCCATGAATGAACAGTTCTACACTGCCTTGAAGAGAGGCTACAGGATGCCTAAACCTGCTCATGCTACAGACGAGATCTATGATATCATGTGCAAGTGTTGGGATGAGAAATTCAAGAAGAggccactcttctcctctctggtTAATTTGACGGGAAACCTACTGACTGATGCTTACAAAAAGAAATACACCCAGGTGAATGAGAGCTTTCTGAAGAGCGACCACCATGCTGCAATCAGGTCCAAACCTATACCAGCAGGGAACCCGGCTGTGTCTTCAGATGACCACTCCTCAGGGGATCGAACGGGTCAGGAGacaggggagatagaggagactgGGACGGAGGCTGGCCCCTCCCAGACTGACTACATAATCGCCATCCCAGATATCCATGTAGTCGAAGAGGCAGAAGCAGGTGGTGAGGTGCTGGACACCGCCACACAGAGTACATCAAGTCCTCCAAGCACAACCGACCAGGCTGATACAGCCTCCCTGGATGGACCAGAAGCACCCCTAGAAGAACCAGTACCCACAGAGGAAGCGGTGCTTGCCCCCACGCAAGAAGACAAGCTCCCCCAGTCTCCATGTACCCCTGAAGTGGAGGAGAGTTTCCTGTAGCCCCTCATTAGAGAGCTGAAGTTAGAGGTGTCTACTGTATAGGACAATGTTGTACATGACAATGTGTGTTGTTAGTTAAACACTAATGTTGTAGGCCCTTTTAGGAAACATTATATCGTTATTATTTGTGTATAttggtaatatactgtatatctttcaGGTACTTTTCCCCTTGTAATGCTATGATTCACAAAAAAAAGCATCAGCAGTTTGACACATGGCAATGGTAATATTATATACAAATGTAATCAAATTGAAGTTGTCAAACTGTAAAGAAAAGTATATTTGGCATGGGAATACATTTAATTtcaatcattaaaaaaaatataatttaaa

Function

GO: NA

KEGG:

id description
K05089 PDGFRB, CD140B; platelet-derived growth factor receptor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1021408 lncRNA upstream 2686 49157707 ~ 49157944 (+) True G897797
TU1021407 lncRNA upstream 3082 49157347 ~ 49157548 (+) True G897796
TU1021400 lncRNA upstream 9358 49151020 ~ 49151272 (+) True G897789
TU1021390 lncRNA upstream 20559 49138265 ~ 49140071 (+) False G897780
TU1021401 lncRNA downstream 3286 49185046 ~ 49186603 (+) True G897790
TU1021434 lncRNA downstream 35900 49217660 ~ 49217898 (+) True G897822
TU1021444 lncRNA downstream 53264 49235024 ~ 49235581 (+) True G897827
TU1021454 lncRNA downstream 95942 49277702 ~ 49281952 (+) False LOC110534184
TU1021455 lncRNA downstream 100258 49282018 ~ 49282710 (+) False LOC110534184
XM_036933294.1 mRNA upstream 56810 49029563 ~ 49103820 (+) False LOC110534177
XM_036933295.1 mRNA upstream 56810 49029563 ~ 49103820 (+) True LOC110534177
XM_021618888.2 mRNA upstream 166697 48988339 ~ 48993933 (+) True LOC110534176
XM_021618887.2 mRNA upstream 180102 48979532 ~ 48980528 (+) True LOC110534174
XM_036933292.1 mRNA upstream 205497 48945663 ~ 48955133 (+) True LOC110534173
XM_021618894.2 mRNA downstream 8183 49189943 ~ 49212130 (+) False LOC110534179
XM_021618897.2 mRNA downstream 8211 49189971 ~ 49212130 (+) True LOC110534179
XM_021618898.2 mRNA downstream 36439 49218199 ~ 49226581 (+) True LOC110534180
XM_021618902.2 mRNA downstream 95866 49277626 ~ 49282746 (+) False LOC110534184
XM_021618906.2 mRNA downstream 245025 49426785 ~ 49431860 (+) False LOC110534189
TU1020802 other upstream 483565 48676257 ~ 48677065 (+) True G897244
TU1019687 other upstream 925014 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 1249655 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1943559 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1955788 47203246 ~ 47204842 (+) True G895652
TU1021453 other downstream 95942 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 248639 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 853230 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 3268458 52450218 ~ 52475365 (+) True G901849
TU1025781 other downstream 3350968 52532728 ~ 52535650 (+) True LOC110534253

Expression Profile