RNA id: XM_021618894.2


Basic Information

Item Value
RNA id XM_021618894.2
length 4367
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC110534179
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49189943 ~ 49212130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAATCAACCAGTTCCTTAACTACCCTGGAGTAGAGCGAACAGACatttacacagagagacagagcagtcagagacagacagaggcagtgaGAGGGACAGAAGATGCTCATCCTAGCCCTTCTCCTGGGCATCATGGTCTGCTGCACAGCCCAAGAGCAGAGCCCTCCAGTGATCAAGCTGAACTCGGTGGTGCTGAGGGAGGCTGTGTGGACTATCCCTGTTGGAACCTCATCTTTCACATTGACCTGTGAGGGGTACAGCACAGTCACCTGGTCAACCACAGCATTCAAACTCATGAGGAAAACTAGATTGGGGAGTGTGATTACCACCAGGCGCcttacagtagactacactggCACATACAAGTGCATGTATGAGAACCAACCAGACCTCCTCTCAGAGGTCCACATCTATGTGAAAGATCCCCATAACATCTTGGTGACCCCTCGAACCCTGGGAGATGTGAAGGAGGGCAGTGATGTTCTCCTCTGTCAGCTGACAAACCCCATAGCCACCGACCTATCCGTCCGTATGGCCAACGGAGACCCTACACCCCCCGACATGAACTACACTGTCAACCCAAAGAGAGGAATCCTCATCCGATACCTTCTGACAAGCCACAGCGCAGACTACGTCTGCAGTGCAAAGATCAATGGGGTCACGAAAGTCTCCAAAGTTGTCCCCATCTTCGTCATTCAAAGCTTGCGTTTGCCACCATCTGTGCTAATTGAGGTAAATGGGTATGTTCGTATTGTTGGAGAGCAGCTCCTGATCCCCTGCATTACCAGCAACCCTAACCACTTCTACAACGTGACGTGGAAACACTCCTCCCTCAAAGTATTGGACTTTTCACATAAAATGATACAAGGGGACCAGAGTAATCAAGTGCACATCACCAGTAGTGTGACTATCCCAGCTGTGGCCATGTCTCACACAGGGAACTTCACGTGTACAGCCATGAATGAGGCTGGGTTCAACAGCTCCACCACCTACCTGCAGGTTGTAGATAAGCCTTACATGAGGCTCATACCCCGCCTGTCACCGGATCTCTACTTAAATGGCTCCTTAGTTGAAGTGAACGAAGGAGAAAACCTTGAGATAAACATTCAGATCGAGGCATATCCTCAAATCATGGAGCAGTGGTGGGACATCCCCATGTCTCACAATCACAACATCTCCACTCATGACGACACATGGGCCGTCCGATTCAATAACAGGTACGAGAGCAGCTTGCTGCTACAGAGAGTGAGGTCTGAGGAGAGAGGCCAGTACACCCTCCACACCAGGAGCACATGCCTCAATGGCTCCATCACCTTCAATGTCCAAGTCTACCAGAAACCCAGTGCCATGGTCCTACTGAAGAATGTTACCACCCTGACCTGCACCGCCTCTGGATACCCAGCTCCCACAATCCTCTGGTACCAGTGCCCAGGAATACAAAACACGTGTGATGGTGATAATGACACGGTGGAGGTGCAGCCTCTTCTCACCAGCACCATGGAGGTGCAGAGTGAGGTGACCCTCAGTCCCTCAAGTATGGAGGTCACAGTGGAGTGTGTGACCTTTAACCTGGTTGGTAAAGAGCGGGACATCTTCGTATTGCGTGTCCCTGCTGCGACTTTACCAACATTTGCAACGCCCAAGCTGTTCACACCCACTTTCATTGGAGCCACCAGCACAGCAACCCTTCTGTTCCTTCTGCTTGTCATCGTCCTGTACAAATACAAGCAGAAACCAAAATATGAAGTCCGGTGGAAGATCATTGAGGCCAATGATGGGAATAACTACACCTTTATTGACCCTACACAACTTCCTTATAACAAGAAGTGGGAGTTCCCTCGTGACAAGCTGAGGCTTGGCCAGATTCTGGGAGCAGGGGCTTTTGGGAAAGTAGTGGAGGCCACTGCCTATGGTCTGGGGACAGGTGACAACATGACCACGCGCGTGGCAGTAAAGATGCTCAAGCCAAGCGCCCACTCCGAAGAGAGAGAAGCTCTGATGTCAGAGCTGAAGATCCTCAGTCACCTGGGATCTCATGACAACATTGTTAACCTGTTAGGGGCGTGTACTCAAGGAGGCCCAATGCTGATGATCACGGAGTACTGCAGCTATGGCGACCTGCTGAACTTCTTGCATGGCAAGGCCAAGCTGTTCCTGTACTCTATCCCGAGAGGACCAGGGACTCCAGAGGTTCCACGGGTTCCAGAGAACCATGATCACTACAAGAACACATGTGCACAGGAGTCCCGTGTAAGGAGtgacaGTGGGATCTCCTGCTCCAGCtcagacaacttcctggacacaCATCCAGCGCAGAGACCCAAACACTGTCCTATGGGTTCCCTATGTGAGGATCCAGAGACAGGCACCTGGTCGCTGGACATAGAAGACTTGTTGAGGTTCTCCTCTCAGGTGGCTCAGGGAATGGACTTCCTGGCATCCAAAAATTGCATTCACAGGGACGTGGCCGCTAGGAACGTCCTCTTGACCGATGGCCGTGTGGCTAAGATCTGCGACTTCGGCCTCGCCAGAGACATCGAAAATGACTCCAACTATGTGGTGAAAGGAAATGCCCGTCTGCCAGTGAAGTGGATGGCCCCTGAGAGCATCTTTGAATGTGTGTACACAGTGAAGAGTGACGTCTGGTCCTATGGGATACTGCTGTGGGAGATCTTCTCTCTGGGTAAGAGCCCATACCCTAATGTTGTGGTGGACACCCGGTTCTACAAGATGATCAAAGATGGATGCTACATGTCTCAGCCAGACTTTGCCCCTCCAGAAATATACACCATCATGAAAATGTGCTGGAACCTGGAACCAACAGAGCGTCCAGCCTTCAGTACCATCGGCCAACTTATCCAAAGGCTACTGCCTGACCAGCCAGACCATACCTACAGGAATGTGCAGGATAAGACTCCACAGCAGGGGGCAGGAGAGCAGGGGGACCCAGATAAGACGAATGGGGATTGTGAACAGACACTGAAccaagagggagaggaggagcccCTGATGAAAAATAACAACTACCAGTTCTGCTGAGAGCACATCAGGCCATCATCAATGACTATACATTCACGTTAACATCTGTCAATCACAGGCAAGAGATGGGTGGATACACACCAGTTTATCCAAATGTCTTGATTCTCATTGTACTGAACATGATTTCAGTGCCATACAGTAGCTGCCAGTAAGCAACATTGGGAACTAAGCTTTTATGCCTTGATTATGTCTTGATCATTGATCAAATGACCAAAAGCTCATAATTAGGTCATATAAATCTAATTatctttaaagctgcaatatgtacacTTTTGGGTGACcccaccaaattcacatagaaatgtgagttatagatctgtcattcgcagtgaaagcaagtctaagaagcagtagatctgttctgtgcACTATTTCTGTTCTGTGCACTGCTTTTCCGTTCACAAGTTTCGTTTTTGCATCTTTCACTTTCTATTTTGTACACAAGCTTCAAGCAGCTGAAAAAAACAACATCTTTTgttatttcacagcggtttagacggTACAATGATTCAcaacactatacttgcttgtttagTCATAAACTGAAATGAGGCATACTATTAGAAtgttagcaaccaggaaatggctgagCGATTTCTAGATAATGTATGTCTATTGGAGAATAAAGGCAGTTACATATGCAGCTTTATGTTTCCAAAAATCCCAAAATTCTCAACACCAATTTCACTGAACTGAGATCAACATTTCAGTACGCCCTAGCAGCACAAAAAGACATAGTTATTGCAAACGCTTTACAATTATATCATATAGTAGCAACATAGTCTCTTTTGAAAGTTTTTCTTGAGTGTTTGAAAATCTGAAGTGTGTGAACTTCAATGGAACCAaatgatttctgttttttgtcttgCCTTCAGCGTAAGAAATGCTTTACATTCAACTGAAACGTACTGTAACTCTTGGCACGCTCAACGCCAGCTTCACAAGGTAGtgacctggaatgaatttcaattaacaggtgtgccttgttaaaagttcattcgtggaatttctttctttcttaatgttTTTGAGCCAAGCAGTTATTGTGCGGAAAActtcaagaactttcaaagtttcttcaagtgcagtcgcaaaaaacaatcaagcgctatgatgaaactggctctcatgaggactgccacaggaaaggaagactcagtgttacctctgctgcagaataTAAATTCATCAGAGTTAACtgaacctcagattgcagcccaaataacagagactgcgtgaatcaggctttcatggtctaattgctgcaaataaaccactactaaaggacaccaataataagaagagacttgcttgggccaagaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1021401 lncRNA upstream 3340 49185046 ~ 49186603 (+) True G897790
TU1021408 lncRNA upstream 31999 49157707 ~ 49157944 (+) True G897797
TU1021407 lncRNA upstream 32395 49157347 ~ 49157548 (+) True G897796
TU1021400 lncRNA upstream 38671 49151020 ~ 49151272 (+) True G897789
TU1021390 lncRNA upstream 49872 49138265 ~ 49140071 (+) False G897780
TU1021434 lncRNA downstream 5530 49217660 ~ 49217898 (+) True G897822
TU1021444 lncRNA downstream 22894 49235024 ~ 49235581 (+) True G897827
TU1021454 lncRNA downstream 65572 49277702 ~ 49281952 (+) False LOC110534184
TU1021455 lncRNA downstream 69888 49282018 ~ 49282710 (+) False LOC110534184
TU1021456 lncRNA downstream 69888 49282018 ~ 49282593 (+) True LOC110534184
XM_021618890.2 mRNA upstream 8183 49160630 ~ 49181760 (+) False LOC110534178
XM_021618892.2 mRNA upstream 8183 49160630 ~ 49181760 (+) True LOC110534178
XM_036933294.1 mRNA upstream 86123 49029563 ~ 49103820 (+) False LOC110534177
XM_036933295.1 mRNA upstream 86123 49029563 ~ 49103820 (+) True LOC110534177
XM_021618888.2 mRNA upstream 196010 48988339 ~ 48993933 (+) True LOC110534176
XM_021618898.2 mRNA downstream 6069 49218199 ~ 49226581 (+) True LOC110534180
XM_021618902.2 mRNA downstream 65496 49277626 ~ 49282746 (+) False LOC110534184
XM_021618906.2 mRNA downstream 214655 49426785 ~ 49431860 (+) False LOC110534189
XM_021618908.2 mRNA downstream 238738 49450868 ~ 49472529 (+) False rgs14b
XM_021618909.2 mRNA downstream 239414 49451544 ~ 49472529 (+) False rgs14b
TU1020802 other upstream 512878 48676257 ~ 48677065 (+) True G897244
TU1019687 other upstream 954327 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 1278968 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 1972872 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 1985101 47203246 ~ 47204842 (+) True G895652
TU1021453 other downstream 65572 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 218269 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 822860 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 3238088 52450218 ~ 52475365 (+) True G901849
TU1025781 other downstream 3320598 52532728 ~ 52535650 (+) True LOC110534253

Expression Profile