RNA id: XM_021618920.2


Basic Information

Item Value
RNA id XM_021618920.2
length 1403
RNA type mRNA
GC content 0.50
exon number 10
gene id clk4b
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49800667 ~ 49810924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCTGGAGCGCAGAGCCCAGGAGCCCAGTGTGGAGCGAGAGAGCCATGGGGACAAGGAGAGGGATGGGGCCAAGGGTGAGACGTGTAAGGAGCGGAGGAACAGAGACTGGCACCACTACAGCAAATCCTCCGCACGCAGTGGCCGTAGCCACCAGAGCTGTCGCACACGACACCGCTCCCGCCGTCACAGCCAGGGGCGCTCAGACTCGATGAGATTGTATCCACTTTAGGAGAAGGGGCTTTCGGGAAAGTGGTGGAATGTATCGACAACCCGAATGATGACACAAGGGTGGCACTGAAGATCATTAAGAACATTGATCGTTACCGGGAGGCTGCCATGTCTGAGGTAGAGGTGCTGGAACAGATGAACTCCCTGGATGACGAGAGAACCTTTGGCTGTGTGCGTATGCTGGACTGGTTCGATTACCATGGCCACATCTGCATTGTGTTTGAGCTTCTGGGTCTCAGCACTTTTGACTTTCTGAAGGAGAACGGCTTCATGCCTTTCACTGTGGACCAGATCAGACACATGGCCTACCAGATCTTCAGAGCTGTGTCCTTTCTCCATCGAAATAAACTGACCCATACTGACCTGAAGCCAGAGAACATTCTCTTTGTCAATTCTGACTATGACATGGAATACAATGCCAAAATGAAACGGGATGAGAGAACTTTGAAGAACCTAGATGTGAAAGTGGTGGATTTTGGTAACGCCACCTTTGACCATGAGCACCACACCTCTGTGGTCTCCACCCGCCATTACAGAGCACCGGAGGTCATCCTTGAGCTGGGGTGGAATCAGTCATGTGATGTGTGGAGTCTGGGCTGCATTCTCCTAGAGTACTATCTTGGGTTAACACTGTTCCAGACGCATGACAGCAAAGAACACCTGGCCATGATGGAGAGGGTTCTGGGGCCCATACCTGTCCACCTACTACAGAAAACTAAGAAGCGGCGGTATGTGCATCATGACCGGCTGGACTGGGATGAAAACAGTTCCTCAGGGAGATATGTGAGGAAGCACTGCAAACCACTCAAGCAATACATGTCCTCCAGGAGCTCAGACCACGAACAGCTATTTGACCTGATCCACAGTATGATGGAGTATGACGTGTCCAGGAGGCTCACCCTGGAAGAGGCCATCTGGCATCCATTCTTCCACCCcatgaggaaggagaggaaaaagTGACCCTGAAGACCACATCACTCACTACTCTACATTTCTCTACTCCAAGGGAGACTTCTATAGACTGCATCAGTCCGCTATCTATGAGATTATTACCCTTGTTTACATACCGATTGAGTTTACCTGCCTGCTTCCTTcagatttaatttatttaacttgTGAATCCTCTTGATCCCCTTTGATTTGTGAATAAATTTGTTTACTATGTTCTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1022287 lncRNA upstream 4740 49797982 ~ 49798281 (+) True G898574
TU1022284 lncRNA upstream 9663 49793052 ~ 49793358 (+) True G898571
TU1022281 lncRNA upstream 11717 49791074 ~ 49791304 (+) True G898568
TU1022226 lncRNA upstream 77598 49725125 ~ 49725423 (+) True G898519
TU1022221 lncRNA upstream 82617 49719969 ~ 49720404 (+) True LOC110533139
TU1022308 lncRNA downstream 5750 49816674 ~ 49816912 (+) True G898583
TU1022310 lncRNA downstream 10206 49821130 ~ 49821647 (+) True G898585
TU1022345 lncRNA downstream 54173 49865097 ~ 49865351 (+) True G898620
TU1022356 lncRNA downstream 67406 49878330 ~ 49878539 (+) True G898630
TU1022371 lncRNA downstream 82896 49893820 ~ 49894042 (+) True G898645
XM_021618914.2 mRNA upstream 49954 49745087 ~ 49753067 (+) False LOC110534196
XM_021618915.2 mRNA upstream 49954 49745574 ~ 49753067 (+) False LOC110534196
XM_021618913.2 mRNA upstream 49954 49745576 ~ 49753067 (+) True LOC110534196
XM_021618912.2 mRNA upstream 72744 49725851 ~ 49730277 (+) True LOC110534194
XR_005034166.1 mRNA upstream 82451 49660880 ~ 49720570 (+) False LOC110533139
XM_036933304.1 mRNA downstream 505 49811429 ~ 49954007 (+) False LOC110534200
XM_036933305.1 mRNA downstream 505 49811429 ~ 49954007 (+) False LOC110534200
XM_036933306.1 mRNA downstream 505 49811429 ~ 49954007 (+) False LOC110534200
XM_036933307.1 mRNA downstream 505 49811429 ~ 49954007 (+) False LOC110534200
XM_036933309.1 mRNA downstream 505 49811429 ~ 49954007 (+) False LOC110534200
TU1021565 other upstream 370063 49430399 ~ 49432958 (+) True LOC110534189
TU1021453 other upstream 521069 49277702 ~ 49281952 (+) False LOC110534184
TU1020802 other upstream 1125956 48676257 ~ 48677065 (+) True G897244
TU1019687 other upstream 1567405 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 1892046 47909716 ~ 47910975 (+) True G896043
TU1022627 other downstream 224066 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 2639294 52450218 ~ 52475365 (+) True G901849
TU1025781 other downstream 2721804 52532728 ~ 52535650 (+) True LOC110534253
TU1026857 other downstream 3705183 53516107 ~ 53519788 (+) False G902707
TU1027004 other downstream 3859196 53670120 ~ 53674811 (+) True G902840

Expression Profile