Gene
RNA
| Item | Value |
|---|---|
| RNA id | NM_001124692.1 |
| length | 2343 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 11 |
| gene id | tp53 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 50387948 ~ 50399688 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0010332 | response to gamma radiation | biological_process |
| GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | biological_process |
| GO:0045786 | negative regulation of cell cycle | biological_process |
| GO:0045787 | positive regulation of cell cycle | biological_process |
| GO:0042771 | intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator | biological_process |
| GO:0006978 | DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator | biological_process |
| GO:0031571 | mitotic G1 DNA damage checkpoint | biological_process |
| GO:0007283 | spermatogenesis | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0010165 | response to X-ray | biological_process |
| GO:0051782 | negative regulation of cell division | biological_process |
| GO:0016525 | negative regulation of angiogenesis | biological_process |
| GO:0031065 | positive regulation of histone deacetylation | biological_process |
| GO:0051262 | protein tetramerization | biological_process |
| GO:0060729 | intestinal epithelial structure maintenance | biological_process |
| GO:0060216 | definitive hemopoiesis | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0071456 | cellular response to hypoxia | biological_process |
| GO:0051597 | response to methylmercury | biological_process |
| GO:0034644 | cellular response to UV | biological_process |
| GO:0043525 | positive regulation of neuron apoptotic process | biological_process |
| GO:0000785 | chromatin | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005657 | replication fork | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0002039 | p53 binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003684 | damaged DNA binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K04451 | TP53, P53; tumor protein p53 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1023298 | lncRNA | downstream | 23131 | 50364563 ~ 50364817 (-) | True | G899533 |
| TU1023292 | lncRNA | downstream | 31147 | 50356340 ~ 50356801 (-) | True | G899527 |
| TU1023289 | lncRNA | downstream | 36640 | 50331401 ~ 50351308 (-) | True | G899524 |
| TU1023281 | lncRNA | downstream | 64861 | 50322836 ~ 50323087 (-) | True | G899518 |
| TU1023219 | lncRNA | downstream | 127576 | 50246298 ~ 50260372 (-) | True | LOC110534213 |
| TU1023350 | lncRNA | upstream | 65779 | 50465467 ~ 50465873 (-) | True | LOC110534220 |
| TU1023389 | lncRNA | upstream | 105952 | 50505640 ~ 50505849 (-) | True | G899616 |
| TU1023393 | lncRNA | upstream | 109410 | 50509098 ~ 50509346 (-) | True | G899620 |
| TU1023399 | lncRNA | upstream | 121879 | 50521567 ~ 50611065 (-) | True | G899626 |
| TU1023412 | lncRNA | upstream | 154026 | 50553714 ~ 50618858 (-) | False | G899636 |
| XM_021618935.2 | mRNA | downstream | 34662 | 50341116 ~ 50353286 (-) | True | slc25a35 |
| XR_002475097.2 | mRNA | downstream | 35105 | 50341116 ~ 50352843 (-) | False | slc25a35 |
| XR_005034173.1 | mRNA | downstream | 37953 | 50346522 ~ 50349995 (-) | True | LOC118936704 |
| XR_005034174.1 | mRNA | downstream | 40374 | 50346522 ~ 50347574 (-) | False | LOC118936704 |
| XM_036934581.1 | mRNA | downstream | 61914 | 50319070 ~ 50326034 (-) | True | grk1b |
| XM_021618938.2 | mRNA | upstream | 1098 | 50400786 ~ 50441167 (-) | False | LOC110534217 |
| XM_021618937.2 | mRNA | upstream | 1098 | 50400786 ~ 50441936 (-) | False | LOC110534217 |
| XM_036933323.1 | mRNA | upstream | 1098 | 50400786 ~ 50442079 (-) | True | LOC110534217 |
| XM_021618939.2 | mRNA | upstream | 52765 | 50452453 ~ 50454180 (-) | False | LOC110534218 |
| XM_021618940.2 | mRNA | upstream | 52765 | 50452453 ~ 50454285 (-) | True | LOC110534218 |
| TU1023178 | other | downstream | 205160 | 50182396 ~ 50182788 (-) | True | G899421 |
| TU1023166 | other | downstream | 231046 | 50156192 ~ 50156902 (-) | True | G899409 |
| TU1021210 | other | downstream | 1503873 | 48881727 ~ 48884075 (-) | True | LOC110534172 |
| TU1020355 | other | downstream | 2398872 | 47987761 ~ 47989076 (-) | True | G896841 |
| TU1019905 | other | downstream | 3154902 | 47230804 ~ 47233046 (-) | True | LOC110534118 |
| TU1023349 | other | upstream | 65779 | 50465467 ~ 50471878 (-) | False | LOC110534220 |
| TU1023512 | other | upstream | 321298 | 50720986 ~ 50721603 (-) | True | G899727 |
| TU1023530 | other | upstream | 343470 | 50743158 ~ 50750233 (-) | True | G899739 |
| TU1023888 | other | upstream | 571075 | 50970763 ~ 50981750 (-) | False | G900070 |
| TU1023889 | other | upstream | 571075 | 50970763 ~ 50981750 (-) | True | G900070 |
