RNA id: XM_036933323.1


Basic Information

Item Value
RNA id XM_036933323.1
length 4037
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC110534217
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50400786 ~ 50442079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGGAGGTGGGGCAATTTACGATTCCTGGTGTCTGTGACGCTCGCCGTTTGGCGCGACGCAGATCCAGTGTGGTGAAACAGAGCTGGCCCCACCAATCCCTACCATTATGCCTGCTCTATTAGAGAGGCCCAAACTGTCCAATGCCATGGCACGCGCCCTGCACAAGCACATCATGCGGGAGCGAGACCGCAAGAGACAAGAGGAAGAAGAAGTAGACAAAATGATGGAGCAGAagcagaaggaggaggaagaaagaaagaggaagaaagaggtggaggagagaatgTCTTTAGATGAGACAAAAGAGCAGATCATGAAGATGGGGGAGAAGCTACAAGGGCTACAAGAGGAGAAACACCAGCTCTTTCTCCAGTTGAAGAAAGTGCtccatgaggaggagaagagacggaGGAAAGAACAGAGTGATATGACAACCCTGACATCATCTACGTACCAGCCCAGCATGGCTATCCACTCCCACTCAGGACAACACCTGCTCAGCATGCAAGCGGGTCAAGTGAGTCACGGCCGCTCTGCTGCCCTGCTAGGAGAACGGAGTAAACAGCTCTTCCAGTCCCCTGTCCTTCCGGGGCGTCACTACCAGAGCCAGCCAGGGATGAGCTCCGGAGGCTTGGAGCATGGGCAGTATGCATCCAGCCAGGCAGCCCATGGCCCCTACGGCCAGCTCACCCAGGCACAGCACGGCACTCCCTTCGCCCCCAGCCAGTCTGTCCCTGTCAGTTACGCCAGCAGCTCACAGCTCAGAGGTGCCTCAGCCTTCCAGGCCATGCAGTACCTGCCTCAACAGCAGCAGGGCTACGCTGTACACAGCCACTTTACCTCTCAGCCAGGATTTATCCCTAGTGCTGGGATCCCTCTACAGAAGCAACTGGAACATGCCAATCAACAGTCTGGCTTCACTGACTCTAGTGCTCTACGGTCCGTGCACCCTCAGGCTCTTCATGCCAGTGCTGCAGGCCTGCTGCCTACCCCCTCCCTCACAGTGCAGATCCCTCCTGCCAAGTCTGGCTTGCCATACACCCATCCCCCCCGTCCGGCTTCTCCAGGAAGCTTCACTCATGGAACTCCTCCACAGCAGGCTCACCCAGCAACGTTTCAGAGCTCTCCTCGGCATGCCTACCTTTCCCACAGCCAATCAGGACAGAGGTTCTACCACCACACCAAGTAAACTGGCAACAACCACCACCAGCAATTAGGGATTGGCATTATTCTCCACACAGATGTAGGCTTCAACTTTAACTGCTGAAATAGTACATCAATGTAGCATTTCTTCTGCCAAAATGTTGCATTATATCCCATAATGTGTATATTGACTACTTTCAGTATGCATTAGCATGTTTTTAAAATTTTATATAACAAAATCTGAATTTCAATAGATAAGCTTTGTTTCATAAAGGGTGTCTCAATCATGACATACTATGATAGAGAATTGGTAGATTCAGAATTATAATATTTGCATTCCAAACAATGGTGCTGTTTTCATTGTTGATGTGTTAGCAAATGAACCCAAGCTTCAGTACTCTGTGCTATTCACTTTTTACTGATAATGAAGGCCTCTTAAAATACTCTTAATATTTGTGTTCTTAAtcttatttaaaacattttaaatgatTAAATGTAAACCCTTCTCAGGGCACATGGAGGAAATGATCATTTGCAAGGAAGAACTCTTCAATTCACTTAAACATGCTGCATTTGTGGAAGCCATATTTTCCTAAACTTTTTAAATGAAAATCTACTAATTTTATTAAATTGCACTTGAAAAGTAAACATGCAATGGCTTTTATTTAATGCAGAGGCGTATGGTGATGTGTAAGAAGAGAACATGTGACAAGATATGTGGGAGGGAAGTGAAGGTGTTATTCTTTGTAAAAACGAAAGAAAGAACTTTGAGATGATGGCTTGGAATAGAAACATTTATTCATACAGCGATGAATCTAAGGAGAGGTCATTCACAAGAAATAAAgcataaaaaaaagtgttaaaggaTCACATGCAGAAGAGTCTTGAATATATGCCAGTCTGTGGGAGAGAAGAAGGGCGGAAGTTGATTATGCATTTTTTAGTGgttaggaagagagggagagcgcgaAAAATGACGAAAAAATGGCCTGCTCTCCAGTGACTCGTCATGTTTCAGATTTCAACTTAAGAGAAAATAAGTAGGTCGAGATAGATATCAAAATATAGCCTACTGTTTTTGGATTCGACCTGTTCCCTTCTGGATTTTACTCTTCACATTGCTATGGGACTGATGAAACTGAAACCAGTGTGTTATTTGAATGAATCACTGAGTCTGTTTTCTTGTAGTTGAAAGCACTGGGATGACTTGACTTTTTATGTGGGTGATGTATCTTTGTGAATTTTGTACAGTTGCTTTTGGAGTGagtgtttatatttatattagttttcctttttttctctctcgtgTATATAGCTTTTTCCTTTTCCATTTCACGTCAACTACtcaatttttttttcttcctataTTTGTCATTCAATCATGGTGGCTATCGGCTAATATCCTTCAAGTTTATACATTTTCCTCACAGATAACGGGGTCTTCGTGAGGGTGTTCCTTTACTTTTTTTAAAAACGGTTGATTTCTACTTCCGAAACGGTTCAAGCAATACAATTGGTTACCAATGATGCTCTTTTCCTGATGTTTTGACCTTCTATTTGACTATACCCAGACCAAACCTCCATTTCCGGGCTTTTAGTCAGTTAGAATTATAGGAGCAATTTTACGTCTTTTGTTCACTATTGTTTATCATGGATCTCTATGCAACCTCTCAATCTTTCCATCTCCCCAGAGTTTCAAACCCACTCACGGAGACCTCTTTCTCTACTACTTTTCCAGGCATCACCGATGACAGGTGGGTGATTCAATTGCAGGAGTAGGTTTGTCATTGATATATTCGATAAACACGCTACGCAGTCGAGCAATTTTAATTGTGTTAATTTATACATATTTCAATTAAACGTATGGTTTCGAAGGTTTTTGATGTAATTAGTCCCATTTTCTATCTGAGAAATATATTTTACACTGATACATTAGTGTTTAGGCTTTTAAAGTATTTTATGAATTATTTGAATTTACTTTAAGGTAAAGGTCGACTGACCGAAAGCTCAGCTACTATTAAAATTAATTTGCATCTGTCTTGAAGTGTGTGGATAGTTTTTCCTGTTTCTCCAGTTTAGCGATTTGCCTCCAGCGCCTTCACTAATCTGACTTAAGTGTGTGGTAGATTCTGCCTATTATCTACAATAATTATTTGAATTAATTATGTATGTATTATTTACTTGCATTTATTGGTTTTGTACGTTATGTATTGTTTGTCAGTCTTGTTCACCATGTCCGGAATGTGCCTGTGACAGAGAGCCATTGTATGTGCCCATGTGGTAGAGAAGCAGAAAGGGATGTGCAGAGAATCTCTGTTTTCCCTGTAAAGTATTTGTCTACATATTTATCTGATTTATATCAAAAGTTTGTTTGAAAAGTTGGATTTTATAACTATGTAGCCTGTATTGACTTTGAGATGGTCAAGAAAATGATGAAATATCCACTTAAACGTCTATCTACTTTTTCAGTAAATGTAATGAAATGGAGGCTCTGAAATCGTCACACCACTCTTTCTGGTGTTTTTAAGTTTGCAATCCAGCATGTATACTCACCTGTGTTTTGAAAGTGAAGCTAAAATGGCTCTTTACTCCAGCATATTGAAATCAAAATGTTTCATAGGAGGCAAccgtacagaatgtcacctttttatttgagggtattttcaaaCATATCTGATTTACCGTTTTAGAAATGAAGGCACTCGGATGGGACTATATACATAAAGTGCTAAAACAGATATTTATGAAAATCCaacatgctggagtatagagccaaatgttAAAAAatgtagcttcactgtccaagTTCATATGAAGGTGAGTGTATATCGTGAAGTGGACATGTAAATGGTTTGTATTCTGTTAATTTGAATCTATAAAAGCATCTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1023298 lncRNA downstream 35969 50364563 ~ 50364817 (-) True G899533
TU1023292 lncRNA downstream 43985 50356340 ~ 50356801 (-) True G899527
TU1023289 lncRNA downstream 49478 50331401 ~ 50351308 (-) True G899524
TU1023281 lncRNA downstream 77699 50322836 ~ 50323087 (-) True G899518
TU1023219 lncRNA downstream 140414 50246298 ~ 50260372 (-) True LOC110534213
TU1023350 lncRNA upstream 23388 50465467 ~ 50465873 (-) True LOC110534220
TU1023389 lncRNA upstream 63561 50505640 ~ 50505849 (-) True G899616
TU1023393 lncRNA upstream 67019 50509098 ~ 50509346 (-) True G899620
TU1023399 lncRNA upstream 79488 50521567 ~ 50611065 (-) True G899626
TU1023412 lncRNA upstream 111635 50553714 ~ 50618858 (-) False G899636
NM_001124692.1 mRNA downstream 1098 50387948 ~ 50399688 (-) True tp53
XM_021618935.2 mRNA downstream 47500 50341116 ~ 50353286 (-) True slc25a35
XR_002475097.2 mRNA downstream 47943 50341116 ~ 50352843 (-) False slc25a35
XM_021618939.2 mRNA upstream 10374 50452453 ~ 50454180 (-) False LOC110534218
XM_021618940.2 mRNA upstream 10374 50452453 ~ 50454285 (-) True LOC110534218
XM_021618941.2 mRNA upstream 21871 50463950 ~ 50482531 (-) False LOC110534220
XM_021618942.2 mRNA upstream 21871 50463950 ~ 50482534 (-) False LOC110534220
XM_036933325.1 mRNA upstream 21871 50463950 ~ 50482534 (-) False LOC110534220
TU1023178 other downstream 217998 50182396 ~ 50182788 (-) True G899421
TU1023166 other downstream 243884 50156192 ~ 50156902 (-) True G899409
TU1021210 other downstream 1516711 48881727 ~ 48884075 (-) True LOC110534172
TU1020355 other downstream 2411710 47987761 ~ 47989076 (-) True G896841
TU1019905 other downstream 3167740 47230804 ~ 47233046 (-) True LOC110534118
TU1023349 other upstream 23388 50465467 ~ 50471878 (-) False LOC110534220
TU1023512 other upstream 278907 50720986 ~ 50721603 (-) True G899727
TU1023530 other upstream 301079 50743158 ~ 50750233 (-) True G899739
TU1023888 other upstream 528684 50970763 ~ 50981750 (-) False G900070
TU1023889 other upstream 528684 50970763 ~ 50981750 (-) True G900070

Expression Profile