RNA id: XM_021618939.2



Basic Information


Item Value
RNA id XM_021618939.2
length 1007
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110534218
representative False

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50452453 ~ 50454285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCAATCCCATGTTTAACCTAGGTTTAGTAACGTCATTGTTCTATTCCTCCTCGTCATAACGTTCAACGTCACGAAATTAGCATTAGCAACAAGGCGAACAGATTTGATAGAATTGCATAGTTTTGCTGCCATACAAAGGGCAGGCATAGGCTAGCTTGAACTGTCATCCAAATTTAGAGTTTGGAGGAATCTTAAACCGTGACAATGAAATTCCTGTATAAAGAGGAGCACCCATTTGAGAAGAGAAGATCGGAGGGGGAAAAGATCAGGAAGAAGTACCCTGATAGAGTGCCAGTGATAGTGGAGAAAGCCCCCAAAGCCAGAATTGGTGATTTGGACAAGAAGAAATATCTTGTACCCTCTGATCTTACAGTGGGACAGTTCTACTTCCTAATACGGAAGAGGATTCACCTGCGGGCAGAGGACGCCCTTTTCTTCTTTGTCAACAATGTCATTCCTCCCACCTCAGCCACCATGGGACTACTTTACCAGGAACACCACGAAGAGGACTTCTTTCTTTACATTGCCTACAGTGACGAGAGTGTCTACGGAAACAGCCAAACGAAAGTCTAGCTAACCACCTTTCAGCACATCTGCAGTCTGACTCTGCATCGTCACAAAGATAAATAAAAGCAATTTAGTTGCCACCAGATTAATCTTTTAATGCACTTTCAAACCCCCTTTCCCCTTTTAAAGCTAAAATCCTTAATTGAAACGATAAAACGACCatcccgcctctgttttggtaaaaagcgaCGGGATGGACCTgtggaaatgtaaccactctcaaattcatagaccgagctattgatgcaaggactgaccatgcaTGATGTCAAAATTATAGTTAACAatattttgaggctatacagtagtTTTTTTAAACGTTGTTTACCAACATTGGAGTAAAACTAGCTTCTATTTTGGGttcaacagttgaactaagctcatgaggcatttataagttatatttttcaagaatcaatgggtatatataatTTATTATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1023298 lncRNA downstream 87636 50364563 ~ 50364817 (-) True G899533
TU1023292 lncRNA downstream 95652 50356340 ~ 50356801 (-) True G899527
TU1023289 lncRNA downstream 101145 50331401 ~ 50351308 (-) True G899524
TU1023281 lncRNA downstream 129366 50322836 ~ 50323087 (-) True G899518
TU1023219 lncRNA downstream 192081 50246298 ~ 50260372 (-) True LOC110534213
TU1023350 lncRNA upstream 11287 50465467 ~ 50465873 (-) True LOC110534220
TU1023389 lncRNA upstream 51460 50505640 ~ 50505849 (-) True G899616
TU1023393 lncRNA upstream 54918 50509098 ~ 50509346 (-) True G899620
TU1023399 lncRNA upstream 67387 50521567 ~ 50611065 (-) True G899626
TU1023412 lncRNA upstream 99534 50553714 ~ 50618858 (-) False G899636
XM_036933323.1 mRNA downstream 10374 50400786 ~ 50442079 (-) True LOC110534217
XM_021618937.2 mRNA downstream 10517 50400786 ~ 50441936 (-) False LOC110534217
XM_021618938.2 mRNA downstream 11286 50400786 ~ 50441167 (-) False LOC110534217
NM_001124692.1 mRNA downstream 52765 50387948 ~ 50399688 (-) True tp53
XM_021618935.2 mRNA downstream 99167 50341116 ~ 50353286 (-) True slc25a35
XM_021618941.2 mRNA upstream 9770 50463950 ~ 50482531 (-) False LOC110534220
XM_021618942.2 mRNA upstream 9770 50463950 ~ 50482534 (-) False LOC110534220
XM_036933325.1 mRNA upstream 9770 50463950 ~ 50482534 (-) False LOC110534220
XM_036933328.1 mRNA upstream 171950 50626130 ~ 50634163 (-) False slc25a15b
XM_021618952.2 mRNA upstream 171950 50626130 ~ 50634934 (-) False slc25a15b
TU1023178 other downstream 269665 50182396 ~ 50182788 (-) True G899421
TU1023166 other downstream 295551 50156192 ~ 50156902 (-) True G899409
TU1021210 other downstream 1568378 48881727 ~ 48884075 (-) True LOC110534172
TU1020355 other downstream 2463377 47987761 ~ 47989076 (-) True G896841
TU1019905 other downstream 3219407 47230804 ~ 47233046 (-) True LOC110534118
TU1023349 other upstream 11287 50465467 ~ 50471878 (-) False LOC110534220
TU1023512 other upstream 266806 50720986 ~ 50721603 (-) True G899727
TU1023530 other upstream 288978 50743158 ~ 50750233 (-) True G899739
TU1023888 other upstream 516583 50970763 ~ 50981750 (-) False G900070
TU1023889 other upstream 516583 50970763 ~ 50981750 (-) True G900070

Expression Profile