RNA id: XM_021618953.2


Basic Information

Item Value
RNA id XM_021618953.2
length 2010
RNA type mRNA
GC content 0.48
exon number 8
gene id slc25a15b
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50626130 ~ 50637048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgccCATGACAGGAAGtaaggctagcgagcaagcattttagccggGTAGCCtagaacaacaaaaaataaaagcgtTCACTCTATGACAGAGTCAGACTGCTTCGTCAACATAAAAAAGAAGAGGATTAAATTGGTGTTTCTCCCCAATAGGATTGGCATTGCAGTAGGCGCTGTACCATAATAAAGGAGGAACCCTTCTACAGGTAGTTCCAGATCTCCATCTCAATGGCCCCACACCCAGTGGTGCAGGCCATCATTGACCTCTCAGCTGGAGCTATAGGAGGTACAGCGTGTGTGCTGAGCGGTCAGCCCCTGGACACAGCCAAGGTGAAGATGCAGACCTTTCCCTCCTTGTACCGAGGCTTTGTCCACTGCTTCTCCTCCACATACAAACAGGTGGGTCTCCGAGGGCTCTACCAGGGTACCAGCCCAGCCCTGATGGCTAACATCGCTGAGAATTCTGTGCTCTTCATGAGCTACGGATTCTGCCAGGAGGTGGTTCGCACAATGGCGGGACTGGGAACGGAGGCTCCACTCAGTGACATGCAAAAAGCATGTGCTGGGTCGGTTgcatccatcttctcctctctggTCCTGTGCCCCACTGAGCTGGTCAAGTGTCGTCTTCAAGCCATGTACGAGATGGAAGCGTCTGGCAAGATCGCAAAGGGCCAAAACACGGTGTGGTCAGTGGTGAAGTCAGTGATGAAGCAAAATGGTCCTACAGGGTTTTTCACAGGCCTGACCACAACCATCGCCAGAGAGGTGCCCGGCTACTTCTGCTTCTTCGGGGCCTACGAGCTCTGCCGAACCACCTTTGCTGACAACATGAAGTGCAGCAAGGATGACATAGGAGTGGCCCCTATTGTGTTCAGTGGGGGTTTCGGGGGTGCATGCCTGTGGCTGGTGGTCTACCCCTTTGACTGTGTCAAGTCTCGCATCCAGGTCATGTCAATGATAGGGCGCCAGGAAGGTTTCTTCAAGACCATGATGACTATCATGAGGACGGAAGGTGTAAGGGCGCTCTATTCTGGTTTGACTCCCACCATGATCCGCACGTTCCCCGCCAACGGAGCCCTGTTCCTGGGGTACGAGGCCAGCCGTAAGTTCATGATGAAACAGTTTGACAGCTGACCTGGTCCTCCTCTGACAACGATGTCCCCCATCTctttttttgccttgtcatttGTACTGGTTAACCCTACTACGTTGTGTCGTTAACCTCCTACAACACTCTGAACTGGTTGAAATGACCTGATTTCAATGAGTTCTGGTTGTAAGTGGGTTGAGCTTTGCCCGCTGGGTTGGGCTCGGAACCCACACTCCTCAGAGAAGCATTGTGGCTAATATTATGTTTTTAGATACTTGACTTAAATGTGAATAAacaatgagtgtacaaaatattaggaacctaatattgagttgagttgcatccccttaacagcctcaattcgttagggaatggactctacaaggtgttaaaagcgttccacagggatgctggcccgtgttgactccaatgcttcccaaagaTGTGTcatggctggatgttctttgggtggtggaccattcttgatacacacaggaaactgttgacatgaaaaacccagcagcattgcagttcctGACACACTtcaaccggtgcgcctggcacctactatagTACTattccccgttcaaaggcacttaaatcttctctgaatggcatacatacacaatccatgtctcttgtctcaaggcttaaaaatccttctttaacctgtctcctcccctttgtctacactgattgaagtagatttaacaggtgacatcgataagggatcatagactgacTGGGTGAATCCAGTTGAAAACGATGTTATGGACCTAATtctttgtacactcggtgtaagGTTGATATACAGGATGCACTCCCAGACCTGATTTGAAACGGGATCAAGGTCTGGAAGTGGAGTATTTAGTGTTTTAATTTTTTACAGTATTAATAAAAGACAtgttattttataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1023412 lncRNA downstream 7272 50553714 ~ 50618858 (-) False G899636
TU1023411 lncRNA downstream 7272 50618420 ~ 50618858 (-) True G899636
TU1023399 lncRNA downstream 15065 50521567 ~ 50611065 (-) True G899626
TU1023393 lncRNA downstream 116784 50509098 ~ 50509346 (-) True G899620
TU1023389 lncRNA downstream 120281 50505640 ~ 50505849 (-) True G899616
TU1023472 lncRNA upstream 936 50636608 ~ 50636897 (-) True slc25a15b
TU1023473 lncRNA upstream 2001 50637673 ~ 50637967 (-) True G899691
TU1023498 lncRNA upstream 44509 50680181 ~ 50680853 (-) True G899713
TU1023497 lncRNA upstream 50534 50686206 ~ 50686725 (-) True G899712
TU1023501 lncRNA upstream 55289 50690961 ~ 50691185 (-) True G899716
XM_021618942.2 mRNA downstream 143596 50463950 ~ 50482534 (-) False LOC110534220
XM_036933325.1 mRNA downstream 143596 50463950 ~ 50482534 (-) False LOC110534220
XM_021618941.2 mRNA downstream 143599 50463950 ~ 50482531 (-) False LOC110534220
XM_021618940.2 mRNA downstream 171845 50452453 ~ 50454285 (-) True LOC110534218
XM_021618939.2 mRNA downstream 171950 50452453 ~ 50454180 (-) False LOC110534218
XR_002475099.2 mRNA upstream 86018 50721690 ~ 50767775 (-) False LOC110534228
XR_002475100.2 mRNA upstream 100491 50736163 ~ 50767820 (-) False LOC110534228
XM_036933332.1 mRNA upstream 317496 50953168 ~ 50961942 (-) False si:ch211-215c18.3
XM_036933331.1 mRNA upstream 317496 50953168 ~ 50962186 (-) True si:ch211-215c18.3
XM_021618973.2 mRNA upstream 821424 51457096 ~ 51559838 (-) False LOC110534238
TU1023349 other downstream 154252 50465467 ~ 50471878 (-) False LOC110534220
TU1023178 other downstream 443342 50182396 ~ 50182788 (-) True G899421
TU1023166 other downstream 469228 50156192 ~ 50156902 (-) True G899409
TU1021210 other downstream 1742055 48881727 ~ 48884075 (-) True LOC110534172
TU1020355 other downstream 2637054 47987761 ~ 47989076 (-) True G896841
TU1023512 other upstream 85314 50720986 ~ 50721603 (-) True G899727
TU1023530 other upstream 107486 50743158 ~ 50750233 (-) True G899739
TU1023888 other upstream 335091 50970763 ~ 50981750 (-) False G900070
TU1023889 other upstream 335091 50970763 ~ 50981750 (-) True G900070
TU1024669 other upstream 819828 51455500 ~ 51455942 (-) True G900807

Expression Profile