RNA id: XM_036933331.1


Basic Information

Item Value
RNA id XM_036933331.1
length 4648
RNA type mRNA
GC content 0.39
exon number 5
gene id si:ch211-215c18.3
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50953168 ~ 50962186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatgagaccaggctggactGCACAGCAGCCATATAATCGCTCACGCCCTCCATACTCTGGGACTGTATCAGCCAATGACTGTATATACGAAGGTGTCAGCACGCTAGGCTACTTCGCATCTCCTTGCGGGATAGCCTATGCTGTATCAGGACAGGACGTCACGGCTTTGACCTAGGGCAAAGAAGCACGAGTTACCCACTTCCATCAGAGCATCTGAACGTACTTCAGTTTACCGGGCCGAGTACACACGAGCCAGCAGGTGCCATGGAGTCGCATCTCTCTGCCACCCCATATCTCCTCCTAGCATTGGTCTCCACAACCTCGGGGTTCTTCTGGACTCCCCGGGGTCCTCAGATGTACCCCTGCCTCACCTACATGGAGCGCAACCTGCGGGTGGACTGTGAGTTCCCTGTGGAAGACAACCCTGCACACCTAGGTCCCTACTGCGAGTACAAGCAGGACAGCCGACTGGTGGGCAGCACCTACCCCAACGCTGTGTCCCTGGTGTCCACAGACAACCGCAGGAGGGCCAACGTGAGCCTGGTCAACCCCACCGTGTGTCGCCTCACCTGGGCTCCGATGGCGGACGATAAGCCCTACACCTACACCTGCAGGGTGTACCAGGGGTCTACCTGGAAGGAGAACAGCATGGCTGTACACCAGCGAATTCTTCCAATCTGTTCAGCCCTCAGCGTGATGTTCCATACCGGGCTATTTCTTCTGTCCCTtgtgatgtcacttcctgtaACTACgggtctcctctctccctgacctCCTTTCAATGTACAGATAGCTAGATGTTATTAAATGTTTTTAAACAGATTTTCATATCATTATTATAGTTCACAATAATAACTACAATTTACTGAGATCATAGACAATGTGTAATGAGTGTGAAACAGTGGTACGTTGGAGGCTGTGGCTCCATATTCACTGTTTTCTGACCACTTCAATGATCACTTCAAAAACTGATCCATCAGACTAGTTCTTATTCTGTACTATCTATTCTCTATACTTTAGGCTTTGCTTATGGTGTATCAGGTGAGAATCCTATCAAACAATTTCTTTATATCAGTCAAACTTTCAGGACTTCCAGACTTTCACGCTCATATCAGCCCTTTGGCTCAGGGATGCTAGTACTGGAATGGATGGTCATATCCTAAAGAGATTCACAATGGctatgtttacacaggcagaccaatagtgatatttttccactaatcgttttttttaaacaatcagATTAGTTAAAAGCAGCCTTTGTGTAAagatatatataattatatatatatatatattttaaatattatCCTTTATTATTTTACCCTAACACTACCACCCCTCcactaattggagtaaactagtgttcaacaacacttaggcttctacttccagtttatacatactatatacattttacgaacacagtatattttataatagttatattttctttatttttgtccCATCCTTCTGCTACccctaccctcaactcctcccatctatctctgaagaccatccagtttagATGTTTTATTTGCTATATAATTTtaaactgtgctgtttcacaaaagttctgaacctatatacattgtacggacacagtatattttacaatagttatcttgTTATTTTTAGTACAACCCTTCAGCttcattcaacccctcccatctatctctgaacaccctCAGGTtttttgcagagttagctccaggtaaatgttgcaattcttcagtaccaaaacaaattatctaatgattctgtctcttcacagcTAAATCTGCAGAGGTGGGATggttgtataataatttaaattattTAACAAAGTTTTGAATCCAGCGTAATTTTATGTATCAGTTCATGAATCATGAAttcattaggcctatggattttaCATGTCTGGGCAGgtgcacagccatgggtgggcctgcgagggcataggcccacccacttgggagccaagcccacccactggggagccatgcCCAACCAATCAGAGTAcgtttttctccacaaaagggctttattacggacagaaatactcctcagtttcatcagctgtccaggtggctggtctcagacgatcacgcaggtgaagaagccggatgtggaggtctttgctggcgtggttacacgtggtgtgCGGCTATGAGGCTAGTTGGATGTACTGTCTAATTCTCTATAATTAcgttggaagcggcttatggtagagaaatgaacattaaattatctgtcaacagctctgttgtacatcctgcagtcagcatgccaattgcacactccttcaaaacttgagacatctgtggaattcttttgtgtgacaaaactgcacattttagagtggccttttattgtccccagcacaaggtgcacctgtgtaatgatcatgctgtttaatcagcttcttgataataCACATCTGTCAAGTGGATTGATtatcttagcaaaggagaaatgctcactaataggaatgtaaacaaatgtatgcacaacatttgagagaaataagctttttgtgcatatggaacatattaaatcttttatttcagataatgaaacatgggacaaacattTTACATGtagcttttatatttttgttcagtgtatattgcaCAGCTGTATATTTTTTGCTCCGTAAATGAAACTGGTCTCATTTTTTTATTCAATCACAATTTTCagtaaccaattttggtctttaatgaaGGGGCGACAGACAAGTTTGCAAACACAGCCTTTGTGAATCTCTTTAGGACATGATCACCCATTCCCATTGTAGCATCCCTGTAGCATTGATGAGATAGTGGGGGGTGAAAAGTAAGGCCAACACTACCGTATCAGCGTGTGTATTTGGCTCACAGCCCCTGATTCTGGGgcacttaaagctgcaatattgtatgtaactttttgggggacccaaccaaattcacatagaaacgATTTATGCTTCCCGTGCTTAAGTTTATTTTTGTATCTTTTACGTTTGGTTTTGAACACCAGCTATAAAGAGCTGATTATACATTATTtttgtactttaaaaaaaaattgcagtatttcagatggtacaatgattatcaATACTTGTTTTggcacataaactgaaattagggcAACTATTATAATTTTtgtaaccaggaaatggcagagtgatTTCTGCCTATTGCACCTTTAAGGATTTCCTCTGAATTACCATTAAGATATTGGCTGAAATGGAAATGAAAGTTGGAAGTTGACAATCCCATGCTATGGCTAAAATATTTATGTGTCAGGTGTCAGGTGGTATGTGTCAGGTGGTATGTTGTAACTATTCAATAATTGGTTAATGATCAACTCTTGCCTTTTATTTCAATCTCAAAGTATTAAGAAACCTTTCATAGATGCAAAGAAATCTGATGCTCTCTCTAGTTTGAAAGTTTTGTTTACATTTTGTCATTCCCACATGTTCTTGTAGATTTCATACAGTAGAAGCTTGAGCTTAGCTAAATTGTATATCAAAGGAAACATTACTCTTAGTGTTGCATAATTACCGATTGCTGATTAGCCATTGAAAGTTAAAGACATGTCATGACTGTGTTAAATGTTTTGATACTCAGCTTCACATGGCACATTATTAGTtattgtaataatgtattaaaaTCCATAGGCAACAattatattcaacattttgtaatGTTATTTTTTAGAAAATTATTAAGTATCTTTATTATCTTTATTAATTATTAAGTATCTTGCCAAAAATGATTGATCAAATTGTACTTTCACTGCACCATAGCATTATTTTGGAAATAATTATATAGGTTATTAACAAGTAAAAGTATTTCATATGCTTTGCAGATTAAAAAATTATTGTAGCATTTTTTTTTAGGACTCATCATGGAGGTCATTCTAGATCTTTGTCCTCAAAAACCTCCAATCACTGTGAATGAGATCAGAGTCTAGAAGACCACACTGAAATTGAGGCTGTTTTAGGACAAGCACAAATTATAGAAAAGCTATTTAGATAATAAGATCAGGTGGTGAATGAATGAGATAGTTATGGTAGTAAATCAAATGAACTAACTAAATGTTTCTGGACAAAAAAATTATTAACTGAAATTAGCACTTGAAATGGACCAGGGTCTCTGATACACACTACCATCACGTGTCCTGATAGTAGTTAGTAAGTTGATAGTTTGTTGATGTTAGTTTTTAGTATGTGCAGAATGAAAGAACATGTAGATGGGTTAAATATGTCTTGTTGATGATGTCATTAGCTGCTTTCCATTCTCTTCCTTTTTCATTCTAATGCTCTTATTGCTCCCACGCACAGCTCATACTGGCACTGCACTAGCTATTTGCACATGCTTCAAGTGCCTAGGCTTTTTGAATGCTGCTTTATTGTTCATATCAGTATCTGTGTCCTTGCAGACAATTCTGCTTCTCTTACACGGCACACCTTACTTAGCACATATCCTGTGTGCTGTACCTTTTTGTTTTTGTCACCACGCACTGAAATCTCATTGTAGTTTGACTGCTTTGCAAAGTGGGATTTGTGAATGTGATGTGTACACATTAGTTTGCCAAACCAGTgttttctctcctttctttcttgcCACTGAATGTGTACAAAATGCAATAGCAAGAAATAAAGGTATAACAGTAAAAATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1023743 lncRNA downstream 121303 50790721 ~ 50831865 (-) True G899939
TU1023567 lncRNA downstream 167349 50785606 ~ 50785819 (-) True G899775
TU1023547 lncRNA downstream 181717 50771238 ~ 50771451 (-) True G899755
TU1023541 lncRNA downstream 190795 50762160 ~ 50762373 (-) True G899749
TU1023532 lncRNA downstream 202327 50750630 ~ 50750841 (-) True G899740
TU1023887 lncRNA upstream 11661 50973847 ~ 50983259 (-) True G900069
TU1023897 lncRNA upstream 32996 50995182 ~ 50995414 (-) True G900078
TU1023906 lncRNA upstream 43124 51005310 ~ 51005722 (-) True G900087
TU1023913 lncRNA upstream 75365 51037551 ~ 51038387 (-) True G900094
TU1023928 lncRNA upstream 81921 51044107 ~ 51044599 (-) True G900109
XR_002475100.2 mRNA downstream 185348 50736163 ~ 50767820 (-) False LOC110534228
XR_002475099.2 mRNA downstream 185393 50721690 ~ 50767775 (-) False LOC110534228
XM_036933327.1 mRNA downstream 316120 50626130 ~ 50637048 (-) False slc25a15b
XM_036933326.1 mRNA downstream 316752 50626130 ~ 50636416 (-) False slc25a15b
XM_021618953.2 mRNA downstream 317496 50626130 ~ 50635672 (-) False slc25a15b
XM_021618973.2 mRNA upstream 494910 51457096 ~ 51559838 (-) False LOC110534238
XM_021618974.2 mRNA upstream 494910 51457096 ~ 51559902 (-) True LOC110534238
XM_021618975.2 mRNA upstream 636441 51598627 ~ 51656987 (-) True LOC110534240
XM_021618976.2 mRNA upstream 1127645 52089831 ~ 52124329 (-) True adamts15a
XM_021618985.2 mRNA upstream 1314145 52276331 ~ 52281912 (-) True atf5a
TU1023530 other downstream 202935 50743158 ~ 50750233 (-) True G899739
TU1023512 other downstream 231565 50720986 ~ 50721603 (-) True G899727
TU1023349 other downstream 481290 50465467 ~ 50471878 (-) False LOC110534220
TU1023178 other downstream 770380 50182396 ~ 50182788 (-) True G899421
TU1023166 other downstream 796266 50156192 ~ 50156902 (-) True G899409
TU1023888 other upstream 8577 50970763 ~ 50981750 (-) False G900070
TU1023889 other upstream 8577 50970763 ~ 50981750 (-) True G900070
TU1024669 other upstream 493314 51455500 ~ 51455942 (-) True G900807
TU1026566 other upstream 1940008 52902194 ~ 52928402 (-) False G902519
TU1027855 other upstream 2910053 53872239 ~ 53878789 (-) True casp3a

Expression Profile